X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 107.81 α = 90
b = 121.67 β = 105.73
c = 61.39 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.1 0.9814 BESSY 14.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.21 50 99.7 0.051 0.052 -- 4.4 37828 37828 0.0 0.0 42.17
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.21 2.3 98.4 0.502 -- -- 4.0 3707

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 2.21 32.891 0.0 1.33 37766 37766 1839 99.14 -- 0.18 0.1784 0.2124 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.21 2.2697 -- 145 2575 0.2654 0.3288 -- 93.0
X Ray Diffraction 2.2697 2.3365 -- 137 2735 0.2208 0.2816 -- 99.0
X Ray Diffraction 2.3365 2.4119 -- 143 2736 0.2082 0.2391 -- 99.0
X Ray Diffraction 2.4119 2.498 -- 143 2797 0.1949 0.2718 -- 100.0
X Ray Diffraction 2.498 2.598 -- 157 2742 0.2024 0.2701 -- 100.0
X Ray Diffraction 2.598 2.7162 -- 146 2800 0.2038 0.2385 -- 100.0
X Ray Diffraction 2.7162 2.8593 -- 139 2753 0.1971 0.2437 -- 100.0
X Ray Diffraction 2.8593 3.0383 -- 129 2800 0.1964 0.2319 -- 100.0
X Ray Diffraction 3.0383 3.2727 -- 132 2803 0.1877 0.2465 -- 100.0
X Ray Diffraction 3.2727 3.6017 -- 125 2814 0.1788 0.202 -- 100.0
X Ray Diffraction 3.6017 4.122 -- 152 2787 0.1544 0.1902 -- 100.0
X Ray Diffraction 4.122 5.1901 -- 143 2796 0.1338 0.1513 -- 100.0
X Ray Diffraction 5.1901 32.8947 -- 148 2789 0.1595 0.1822 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model Isotropic
Mean Isotropic B 61.0035
Anisotropic B[1][1] 9.7861
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -6.9762
Anisotropic B[2][2] -7.585
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.2011
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.06
f_bond_d 0.005
f_dihedral_angle_d 17.354
f_plane_restr 0.003
f_angle_d 0.881
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.31
Luzzati Sigma A (Observed) 0.33
Luzzati Resolution Cutoff (Low) 8.0
Luzzati ESD (R-Free Set) 0.32
Luzzati Sigma A (R-Free Set) 0.33
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4547
Nucleic Acid Atoms 0
Heterogen Atoms 42
Solvent Atoms 219

Software

Software
Software Name Purpose
SCALEPACK data scaling
PHENIX refinement version: 1.6.1_357
PDB_EXTRACT data extraction version: 3.10