X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.62 α = 90
b = 72.09 β = 95.78
c = 84.07 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-B -- APS 23-ID-B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.75 29.65 -- -- -- -- -- -- 85554 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.75 29.65 -- 0.0 -- 85506 4297 98.17 -- 0.1782 0.1761 0.2175 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.75 1.795 -- 289 5736 0.249 0.29 -- 94.05
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 23.494
Anisotropic B[1][1] -1.4
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.91
Anisotropic B[2][2] 0.82
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.4
RMS Deviations
Key Refinement Restraint Deviation
r_angle_refined_deg 1.508
r_mcangle_it 1.338
r_scangle_it 3.541
r_dihedral_angle_3_deg 13.927
r_gen_planes_refined 0.007
r_scbond_it 2.393
r_bond_refined_d 0.013
r_dihedral_angle_2_deg 35.669
r_mcbond_it 0.745
r_dihedral_angle_4_deg 19.719
r_chiral_restr 0.096
r_dihedral_angle_1_deg 6.517
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6534
Nucleic Acid Atoms 0
Heterogen Atoms 116
Solvent Atoms 1003

Software

Software
Software Name Purpose
REFMAC refinement version: 5.5.0109
PDB_EXTRACT data extraction version: 3.10