X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.5
Temperature 295.0
Details 30% PEG400, 200 mM MgCl2, 100 mM HEPES, pH 7.5, vapor diffusion, hanging drop, temperature 295K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 163.17 α = 90
b = 153.53 β = 117.99
c = 109.62 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2009-02-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E 0.97920 APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 39 -- -- -- -- -- 143976 69157 -- -- 44.75

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.612 39.0 -- 0.09 -- 63765 3204 88.42 -- 0.2231 0.2206 0.2714 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.6123 2.6512 -- 76 1574 0.3199 0.3755 -- 53.0
X Ray Diffraction 2.6512 2.6927 -- 117 1968 0.3261 0.441 -- 67.0
X Ray Diffraction 2.6927 2.7368 -- 122 2133 0.3171 0.3933 -- 71.0
X Ray Diffraction 2.7368 2.784 -- 126 2215 0.3177 0.3932 -- 76.0
X Ray Diffraction 2.784 2.8346 -- 132 2339 0.3176 0.3497 -- 79.0
X Ray Diffraction 2.8346 2.8891 -- 106 2460 0.2949 0.4185 -- 82.0
X Ray Diffraction 2.8891 2.948 -- 118 2559 0.2915 0.3293 -- 86.0
X Ray Diffraction 2.948 3.0121 -- 134 2551 0.2751 0.3104 -- 87.0
X Ray Diffraction 3.0121 3.0822 -- 123 2648 0.283 0.327 -- 88.0
X Ray Diffraction 3.0822 3.1592 -- 149 2652 0.2853 0.3467 -- 90.0
X Ray Diffraction 3.1592 3.2446 -- 152 2743 0.287 0.3225 -- 92.0
X Ray Diffraction 3.2446 3.34 -- 147 2790 0.2497 0.3977 -- 94.0
X Ray Diffraction 3.34 3.4478 -- 156 2823 0.2324 0.2958 -- 95.0
X Ray Diffraction 3.4478 3.5709 -- 165 2849 0.2236 0.2824 -- 96.0
X Ray Diffraction 3.5709 3.7138 -- 151 2868 0.203 0.2626 -- 97.0
X Ray Diffraction 3.7138 3.8826 -- 162 2903 0.1956 0.2622 -- 97.0
X Ray Diffraction 3.8826 4.0871 -- 146 2900 0.179 0.2462 -- 98.0
X Ray Diffraction 4.0871 4.3429 -- 150 2948 0.1626 0.1778 -- 98.0
X Ray Diffraction 4.3429 4.6777 -- 145 2940 0.1473 0.2073 -- 98.0
X Ray Diffraction 4.6777 5.1475 -- 159 2945 0.1643 0.199 -- 99.0
X Ray Diffraction 5.1475 5.8902 -- 150 2967 0.1965 0.2262 -- 98.0
X Ray Diffraction 5.8902 7.4128 -- 165 2909 0.2224 0.2809 -- 97.0
X Ray Diffraction 7.4128 39.1621 -- 153 2877 0.1856 0.2023 -- 95.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 56.5267
Anisotropic B[1][1] -3.9535
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -23.3315
Anisotropic B[2][2] 0.1403
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 3.8131
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.08
f_dihedral_angle_d 19.741
f_bond_d 0.008
f_angle_d 1.195
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11516
Nucleic Acid Atoms 0
Heterogen Atoms 161
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement
PDB_EXTRACT data extraction version: 3.10