X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Details VAPOR DIFFUSION, SITTING DROP

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 92.18 α = 90
b = 92.18 β = 90
c = 108.97 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2010-04-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.6 46.91 97.3 0.028 -- -- 8.7 -- 60859 0.0 0.0 21.5
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.6 1.63 70.1 0.59 -- 1.1 3.6 1582

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.6 46.906 -- 0.02 -- 55169 2770 88.39 -- 0.1976 0.1956 0.2364 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6002 1.6278 -- 89 1672 0.3033 0.3628 -- 57.0
X Ray Diffraction 1.6278 1.6574 -- 123 2017 0.2694 0.3326 -- 70.0
X Ray Diffraction 1.6574 1.6893 -- 87 2271 0.2443 0.2756 -- 77.0
X Ray Diffraction 1.6893 1.7238 -- 131 2459 0.249 0.2538 -- 84.0
X Ray Diffraction 1.7238 1.7613 -- 121 2594 0.2321 0.2876 -- 88.0
X Ray Diffraction 1.7613 1.8022 -- 142 2636 0.2158 0.2965 -- 90.0
X Ray Diffraction 1.8022 1.8473 -- 133 2646 0.2155 0.2615 -- 90.0
X Ray Diffraction 1.8473 1.8972 -- 120 2160 0.2289 0.3035 -- 75.0
X Ray Diffraction 1.8972 1.9531 -- 143 2408 0.3201 0.3519 -- 82.0
X Ray Diffraction 1.9531 2.0161 -- 134 2678 0.1926 0.2364 -- 91.0
X Ray Diffraction 2.0161 2.0882 -- 177 2809 0.1938 0.2415 -- 97.0
X Ray Diffraction 2.0882 2.1718 -- 152 2875 0.1891 0.2468 -- 97.0
X Ray Diffraction 2.1718 2.2706 -- 124 2501 0.2533 0.2894 -- 85.0
X Ray Diffraction 2.2706 2.3903 -- 141 2656 0.1798 0.2138 -- 90.0
X Ray Diffraction 2.3903 2.5401 -- 148 2935 0.1781 0.2362 -- 98.0
X Ray Diffraction 2.5401 2.7362 -- 142 2945 0.1813 0.208 -- 98.0
X Ray Diffraction 2.7362 3.0115 -- 155 2965 0.1906 0.2459 -- 99.0
X Ray Diffraction 3.0115 3.4471 -- 165 2994 0.1831 0.2006 -- 99.0
X Ray Diffraction 3.4471 4.3426 -- 164 3001 0.1655 0.1821 -- 98.0
X Ray Diffraction 4.3426 46.9257 -- 179 3177 0.1642 0.2001 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -4.1485
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -4.1485
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 8.2971
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.071
f_bond_d 0.006
f_angle_d 1.107
f_dihedral_angle_d 13.141
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3140
Nucleic Acid Atoms 0
Heterogen Atoms 35
Solvent Atoms 387

Software

Software
Software Name Purpose
PHASER phasing
PHENIX refinement version: (phenix.refine: 1.6_289)
XDS data reduction
SADABS data scaling