X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 293.0
Details 0.9 M lithium chloride, 0.1 M citric acid, 20 % PEG 6000, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 50.53 α = 90
b = 106.93 β = 91.28
c = 147.14 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MAR CCD 165 mm mirrors 2008-11-28
Diffraction Radiation
Monochromator Protocol
mirrors SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 0.98696 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 43.4 95.3 -- 0.05 -- 2.2 69479 66243 0.0 -3.0 45.4
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.3 2.36 10.0 -- 0.13 7.6 2.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.3 43.375 -- 2.0 69479 66225 3975 95.34 -- 0.2061 0.2033 0.2498 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3 2.3281 -- 104 1636 0.2687 0.3035 -- 72.0
X Ray Diffraction 2.3281 2.3576 -- 121 1893 0.2595 0.3233 -- 82.0
X Ray Diffraction 2.3576 2.3886 -- 141 2201 0.2658 0.3083 -- 94.0
X Ray Diffraction 2.3886 2.4213 -- 145 2276 0.2641 0.3496 -- 97.0
X Ray Diffraction 2.4213 2.4559 -- 140 2201 0.2543 0.2815 -- 97.0
X Ray Diffraction 2.4559 2.4926 -- 147 2302 0.2516 0.2969 -- 97.0
X Ray Diffraction 2.4926 2.5315 -- 145 2257 0.2546 0.3339 -- 97.0
X Ray Diffraction 2.5315 2.573 -- 141 2218 0.2481 0.3286 -- 97.0
X Ray Diffraction 2.573 2.6174 -- 145 2268 0.2337 0.2645 -- 97.0
X Ray Diffraction 2.6174 2.6649 -- 144 2256 0.2407 0.2933 -- 97.0
X Ray Diffraction 2.6649 2.7162 -- 144 2258 0.2576 0.3276 -- 97.0
X Ray Diffraction 2.7162 2.7716 -- 143 2238 0.2368 0.3047 -- 97.0
X Ray Diffraction 2.7716 2.8319 -- 146 2290 0.2364 0.2983 -- 97.0
X Ray Diffraction 2.8319 2.8977 -- 144 2255 0.2236 0.2902 -- 97.0
X Ray Diffraction 2.8977 2.9702 -- 146 2296 0.2251 0.2848 -- 97.0
X Ray Diffraction 2.9702 3.0505 -- 143 2230 0.223 0.2954 -- 97.0
X Ray Diffraction 3.0505 3.1402 -- 145 2278 0.229 0.2833 -- 97.0
X Ray Diffraction 3.1402 3.2416 -- 143 2230 0.2135 0.2803 -- 97.0
X Ray Diffraction 3.2416 3.3574 -- 146 2300 0.2102 0.2547 -- 97.0
X Ray Diffraction 3.3574 3.4917 -- 144 2248 0.2005 0.2339 -- 97.0
X Ray Diffraction 3.4917 3.6506 -- 146 2283 0.1952 0.2286 -- 97.0
X Ray Diffraction 3.6506 3.8429 -- 144 2258 0.1837 0.247 -- 97.0
X Ray Diffraction 3.8429 4.0835 -- 146 2288 0.1807 0.2399 -- 98.0
X Ray Diffraction 4.0835 4.3985 -- 144 2264 0.1616 0.2068 -- 97.0
X Ray Diffraction 4.3985 4.8407 -- 146 2278 0.1469 0.1744 -- 97.0
X Ray Diffraction 4.8407 5.5399 -- 147 2308 0.1619 0.1838 -- 97.0
X Ray Diffraction 5.5399 6.975 -- 145 2268 0.1817 0.2242 -- 96.0
X Ray Diffraction 6.975 43.3831 -- 140 2172 0.1637 0.1817 -- 91.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model overall
Anisotropic B[1][1] -1.2086
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 3.0067
Anisotropic B[2][2] -0.2172
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -7.3084
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.074
f_angle_d 1.084
f_bond_d 0.007
f_dihedral_angle_d 16.24
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.3
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12070
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 400

Software

Software
Software Name Purpose
MOSFLM data reduction
PHENIX model building
PHENIX refinement version: (phenix.refine)
XDS data reduction
XDS data scaling
PHENIX phasing