X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 92.41 α = 90
b = 92.41 β = 90
c = 243.98 γ = 120
Symmetry
Space Group P 65 2 2

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH3R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.95 -- -- -- -- -- -- -- 45221 -- -- 34.33

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.95 36.252 -- 1.34 -- 45221 2271 98.61 -- 0.216 0.214 0.255 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.95 1.992 -- 123 2625 0.211 0.275 -- 99.0
X Ray Diffraction 1.992 2.039 -- 149 2613 0.214 0.253 -- 99.0
X Ray Diffraction 2.039 2.09 -- 144 2624 0.212 0.271 -- 99.0
X Ray Diffraction 2.09 2.146 -- 166 2618 0.205 0.256 -- 99.0
X Ray Diffraction 2.146 2.209 -- 144 2645 0.208 0.303 -- 99.0
X Ray Diffraction 2.209 2.281 -- 125 2654 0.203 0.253 -- 99.0
X Ray Diffraction 2.281 2.362 -- 120 2681 0.209 0.268 -- 99.0
X Ray Diffraction 2.362 2.457 -- 132 2669 0.228 0.287 -- 99.0
X Ray Diffraction 2.457 2.569 -- 130 2699 0.232 0.289 -- 99.0
X Ray Diffraction 2.569 2.704 -- 130 2697 0.231 0.308 -- 100.0
X Ray Diffraction 2.704 2.873 -- 149 2701 0.237 0.254 -- 99.0
X Ray Diffraction 2.873 3.095 -- 169 2689 0.235 0.29 -- 100.0
X Ray Diffraction 3.095 3.406 -- 153 2719 0.222 0.249 -- 100.0
X Ray Diffraction 3.406 3.899 -- 148 2762 0.205 0.249 -- 100.0
X Ray Diffraction 3.899 4.91 -- 146 2759 0.175 0.208 -- 98.0
X Ray Diffraction 4.91 36.259 -- 143 2795 0.225 0.24 -- 93.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 40.436
Anisotropic B[1][1] 2.902
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.902
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -5.804
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.008
f_dihedral_angle_d 17.831
f_chiral_restr 0.08
f_angle_d 1.131
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4316
Nucleic Acid Atoms 0
Heterogen Atoms 31
Solvent Atoms 152

Software

Software
Software Name Purpose
PHENIX refinement version: 1.4_6
PDB_EXTRACT data extraction version: 3.005