X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Details vapor diffusion

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 90.38 α = 90
b = 90.38 β = 90
c = 217.52 γ = 120
Symmetry
Space Group P 32 2 1

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-D -- APS 23-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.01 78 -- -- -- -- -- -- 18676 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 3.01 44.66 -- 0.0 -- 18676 971 88.08 -- 0.239 0.236 0.301 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.01 3.085 -- 44 813 0.342 0.412 -- 57.1
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 121.193
Anisotropic B[1][1] 4.48
Anisotropic B[1][2] 2.24
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 4.48
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -6.72
RMS Deviations
Key Refinement Restraint Deviation
r_scbond_it 1.033
r_dihedral_angle_1_deg 7.568
r_bond_refined_d 0.018
r_nbd_refined 0.253
r_dihedral_angle_2_deg 39.224
r_dihedral_angle_4_deg 23.071
r_symmetry_hbond_refined 0.37
r_gen_planes_refined 0.006
r_mcbond_it 0.388
r_scangle_it 1.606
r_angle_refined_deg 1.844
r_dihedral_angle_3_deg 23.591
r_mcangle_it 0.63
r_nbtor_refined 0.328
r_symmetry_vdw_refined 0.484
r_chiral_restr 0.126
r_xyhbond_nbd_refined 0.163
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6244
Nucleic Acid Atoms 0
Heterogen Atoms 61
Solvent Atoms 0

Software

Software
Software Name Purpose
REFMAC refinement
PDB_EXTRACT data extraction version: 3.006