X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.4
Temperature 293.0
Details 40 to 44% MPD, 0.1M MOPS, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 79.48 α = 90
b = 152.95 β = 90
c = 183.86 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 105
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r mirrors 2007-07-23
Diffraction Radiation
Monochromator Protocol
Si(311) and Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 1.064 ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 70.5 99.4 -- 0.063 -- 3.9 -- 102912 -- -- 24.4
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 99.4 -- 0.233 3.2 3.9 12476

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 70.527 -- 1.35 -- 102912 5150 99.31 -- 0.19 0.188 0.22 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.821 -- 179 3200 0.269 0.301 -- 100.0
X Ray Diffraction 1.821 1.842 -- 165 3295 0.254 0.27 -- 100.0
X Ray Diffraction 1.842 1.864 -- 177 3211 0.249 0.279 -- 100.0
X Ray Diffraction 1.864 1.888 -- 164 3277 0.232 0.29 -- 100.0
X Ray Diffraction 1.888 1.913 -- 173 3249 0.221 0.241 -- 100.0
X Ray Diffraction 1.913 1.939 -- 184 3233 0.208 0.242 -- 100.0
X Ray Diffraction 1.939 1.967 -- 168 3247 0.197 0.255 -- 100.0
X Ray Diffraction 1.967 1.996 -- 158 3267 0.211 0.246 -- 100.0
X Ray Diffraction 1.996 2.027 -- 171 3238 0.209 0.249 -- 100.0
X Ray Diffraction 2.027 2.06 -- 172 3259 0.199 0.226 -- 100.0
X Ray Diffraction 2.06 2.096 -- 141 3307 0.196 0.249 -- 100.0
X Ray Diffraction 2.096 2.134 -- 169 3238 0.203 0.23 -- 100.0
X Ray Diffraction 2.134 2.175 -- 164 3266 0.191 0.222 -- 100.0
X Ray Diffraction 2.175 2.22 -- 180 3254 0.189 0.23 -- 100.0
X Ray Diffraction 2.22 2.268 -- 182 3271 0.194 0.245 -- 100.0
X Ray Diffraction 2.268 2.321 -- 161 3259 0.191 0.228 -- 100.0
X Ray Diffraction 2.321 2.379 -- 154 3246 0.187 0.211 -- 100.0
X Ray Diffraction 2.379 2.443 -- 157 3300 0.193 0.236 -- 100.0
X Ray Diffraction 2.443 2.515 -- 170 3249 0.203 0.238 -- 100.0
X Ray Diffraction 2.515 2.596 -- 180 3263 0.215 0.263 -- 100.0
X Ray Diffraction 2.596 2.689 -- 163 3283 0.201 0.22 -- 99.0
X Ray Diffraction 2.689 2.796 -- 209 3205 0.201 0.244 -- 99.0
X Ray Diffraction 2.796 2.924 -- 182 3254 0.194 0.228 -- 99.0
X Ray Diffraction 2.924 3.078 -- 178 3289 0.197 0.235 -- 99.0
X Ray Diffraction 3.078 3.271 -- 171 3247 0.178 0.193 -- 99.0
X Ray Diffraction 3.271 3.523 -- 174 3260 0.167 0.198 -- 99.0
X Ray Diffraction 3.523 3.878 -- 177 3276 0.163 0.189 -- 99.0
X Ray Diffraction 3.878 4.439 -- 196 3217 0.153 0.164 -- 97.0
X Ray Diffraction 4.439 5.592 -- 149 3247 0.152 0.175 -- 96.0
X Ray Diffraction 5.592 70.582 -- 182 3355 0.189 0.231 -- 96.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 28.391
Anisotropic B[1][1] -1.776
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.533
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.243
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.069
f_dihedral_angle_d 19.192
f_bond_d 0.005
f_plane_restr 0.003
f_angle_d 0.993
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6331
Nucleic Acid Atoms 0
Heterogen Atoms 204
Solvent Atoms 678

Software

Software
Software Name Purpose
ADSC data collection version: Quantum
AMoRE phasing
PHENIX refinement version: (phenix.refine)
MOSFLM data reduction
SCALA data scaling