X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 277.0
Details 0.1M Tris-HCl, pH8.5, 2M NaCl, 14% PEG6000, VAPOR DIFFUSION, HANGING DROP, temperature 277K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 137.34 α = 90
b = 137.02 β = 110.36
c = 178.99 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 143
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 4 -- 2004-01-20
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.9 20 97.04 0.095 -- -- -- 137596 133523 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.9 3.0 89.9 0.434 -- 2.67 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.9 19.986 -- 0.01 137652 133523 6713 97.04 -- 0.2122 0.2097 0.258 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8976 2.9304 -- 172 3675 0.2855 0.3397 -- 84.0
X Ray Diffraction 2.9304 2.9648 -- 185 3889 0.2855 0.3236 -- 90.0
X Ray Diffraction 2.9648 3.0008 -- 225 3903 0.286 0.3236 -- 91.0
X Ray Diffraction 3.0008 3.0387 -- 234 4007 0.2874 0.3362 -- 93.0
X Ray Diffraction 3.0387 3.0785 -- 253 3994 0.2863 0.3646 -- 93.0
X Ray Diffraction 3.0785 3.1205 -- 228 4119 0.2763 0.3542 -- 95.0
X Ray Diffraction 3.1205 3.165 -- 208 4138 0.2672 0.3389 -- 96.0
X Ray Diffraction 3.165 3.212 -- 210 4194 0.2515 0.3254 -- 96.0
X Ray Diffraction 3.212 3.262 -- 200 4229 0.2628 0.3173 -- 96.0
X Ray Diffraction 3.262 3.3152 -- 227 4168 0.2525 0.3447 -- 97.0
X Ray Diffraction 3.3152 3.3721 -- 242 4206 0.2429 0.2641 -- 97.0
X Ray Diffraction 3.3721 3.4332 -- 220 4246 0.2373 0.3093 -- 97.0
X Ray Diffraction 3.4332 3.4988 -- 234 4228 0.2062 0.2523 -- 98.0
X Ray Diffraction 3.4988 3.5699 -- 235 4292 0.2026 0.2661 -- 99.0
X Ray Diffraction 3.5699 3.647 -- 253 4293 0.2051 0.2634 -- 99.0
X Ray Diffraction 3.647 3.7313 -- 230 4300 0.2069 0.2603 -- 99.0
X Ray Diffraction 3.7313 3.824 -- 202 4358 0.2037 0.262 -- 99.0
X Ray Diffraction 3.824 3.9267 -- 247 4264 0.1909 0.2407 -- 99.0
X Ray Diffraction 3.9267 4.0413 -- 214 4362 0.1751 0.2432 -- 99.0
X Ray Diffraction 4.0413 4.1706 -- 222 4343 0.1702 0.2125 -- 99.0
X Ray Diffraction 4.1706 4.3182 -- 223 4303 0.1751 0.2137 -- 99.0
X Ray Diffraction 4.3182 4.4892 -- 239 4335 0.1565 0.1989 -- 100.0
X Ray Diffraction 4.4892 4.691 -- 226 4327 0.1781 0.2151 -- 99.0
X Ray Diffraction 4.691 4.9348 -- 236 4340 0.1864 0.2231 -- 99.0
X Ray Diffraction 4.9348 5.2388 -- 205 4406 0.1819 0.2083 -- 100.0
X Ray Diffraction 5.2388 5.6349 -- 206 4369 0.1904 0.2435 -- 99.0
X Ray Diffraction 5.6349 6.1866 -- 259 4326 0.1911 0.2394 -- 99.0
X Ray Diffraction 6.1866 7.0473 -- 223 4364 0.1789 0.2213 -- 100.0
X Ray Diffraction 7.0473 8.7529 -- 226 4413 0.1624 0.1896 -- 100.0
X Ray Diffraction 8.7529 19.9863 -- 229 4419 0.1876 0.2071 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model isotropic
Mean Isotropic B 45.13
RMS Deviations
Key Refinement Restraint Deviation
f_angle_deg 1.108
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 38312
Nucleic Acid Atoms 0
Heterogen Atoms 608
Solvent Atoms 166

Software

Software
Software Name Purpose
ADSC data collection version: Quantum
AMoRE phasing
PHENIX refinement
HKL-2000 data reduction
HKL-2000 data scaling