X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.19 α = 90
b = 64.26 β = 99.16
c = 50.47 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-D -- APS 21-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.6 25 -- -- -- -- -- -- 32604 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.6 25.0 -- -- -- 32604 1717 97.74 -- 0.19618 0.19473 0.22339 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.601 1.642 -- 124 2133 0.243 0.307 -- 87.45
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 26.632
Anisotropic B[1][1] 2.12
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.1
Anisotropic B[2][2] -1.45
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.7
RMS Deviations
Key Refinement Restraint Deviation
r_mcbond_it 0.827
r_xyhbond_nbd_refined 0.141
r_symmetry_hbond_refined 0.129
r_mcangle_it 1.461
r_dihedral_angle_1_deg 4.935
r_nbtor_refined 0.304
r_nbd_refined 0.205
r_metal_ion_refined 0.017
r_dihedral_angle_2_deg 32.46
r_dihedral_angle_4_deg 17.158
r_symmetry_vdw_refined 0.202
r_scangle_it 3.396
r_bond_refined_d 0.009
r_scbond_it 2.214
r_dihedral_angle_3_deg 12.699
r_angle_refined_deg 1.129
r_chiral_restr 0.069
r_gen_planes_refined 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2074
Nucleic Acid Atoms 0
Heterogen Atoms 20
Solvent Atoms 241

Software

Software
Software Name Purpose
REFMAC refinement version: 5.2.0019