X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 76.23 α = 90
b = 80.68 β = 90
c = 235.92 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.5 -- -- 0.108 -- -- 6.7 -- 18963 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.5 47.61 -- -- -- 18963 969 99.15 -- 0.25301 0.24973 0.31535 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.501 3.592 -- 66 1193 0.25 0.302 -- 91.43
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 77.197
Anisotropic B[1][1] -1.04
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 5.72
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -4.68
RMS Deviations
Key Refinement Restraint Deviation
r_scbond_it 0.541
r_gen_planes_refined 0.003
r_angle_refined_deg 1.018
r_xyhbond_nbd_refined 0.127
r_chiral_restr 0.073
r_scangle_it 0.937
r_nbd_refined 0.196
r_dihedral_angle_3_deg 18.932
r_dihedral_angle_1_deg 5.662
r_symmetry_vdw_refined 0.145
r_nbtor_refined 0.301
r_bond_refined_d 0.007
r_mcangle_it 0.564
r_dihedral_angle_4_deg 13.335
r_dihedral_angle_2_deg 36.534
r_mcbond_it 0.314
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5537
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 0

Software

Software
Software Name Purpose
REFMAC refinement version: 5.2.0019
HKL-2000 data reduction
SCALEPACK data scaling
REFMAC phasing version: 5.2.0019