X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Temperature 293.0
Details PLCSPPH(Y495F) WAS CRYSTALLIZED USING A PROTEIN CONCENTRATION OF 36 MG/ML WITH PRECIPITANT (20% PEG3350, 100 MM BIS-TRIS PROPANE PH 7.5) AT A CONSTANT TEMPERATURE OF 20C

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 92.22 α = 90
b = 106.02 β = 90
c = 194.1 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- 2007-11-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 -- Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.3 70 98.4 0.09 -- -- 3.7 -- 28821 -- 0.0 85.51
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.3 3.48 95.2 0.56 -- 1.4 3.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.8 97.05 -- 1.2 -- 80476 4099 88.9 -- 0.306 0.303 0.352 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8002 2.8332 -- 34 773 0.4148 0.3544 -- 26.0
X Ray Diffraction 2.8332 2.8677 -- 59 1583 0.3879 0.4249 -- 52.0
X Ray Diffraction 2.8677 2.904 -- 114 1989 0.407 0.4113 -- 68.0
X Ray Diffraction 2.904 2.9422 -- 107 2319 0.3925 0.399 -- 78.0
X Ray Diffraction 2.9422 2.9826 -- 147 2531 0.4013 0.4328 -- 85.0
X Ray Diffraction 2.9826 3.0252 -- 136 2572 0.3921 0.3954 -- 87.0
X Ray Diffraction 3.0252 3.0703 -- 150 2665 0.3791 0.4082 -- 90.0
X Ray Diffraction 3.0703 3.1183 -- 118 2680 0.3834 0.4372 -- 89.0
X Ray Diffraction 3.1183 3.1694 -- 136 2646 0.3749 0.3682 -- 91.0
X Ray Diffraction 3.1694 3.2241 -- 143 2695 0.3719 0.4142 -- 91.0
X Ray Diffraction 3.2241 3.2827 -- 165 2719 0.3726 0.3975 -- 92.0
X Ray Diffraction 3.2827 3.3459 -- 187 2673 0.3655 0.4154 -- 92.0
X Ray Diffraction 3.3459 3.4142 -- 135 2764 0.3605 0.3219 -- 92.0
X Ray Diffraction 3.4142 3.4884 -- 121 2725 0.3712 0.4273 -- 93.0
X Ray Diffraction 3.4884 3.5695 -- 190 2762 0.3707 0.3881 -- 94.0
X Ray Diffraction 3.5695 3.6588 -- 155 2777 0.3757 0.4442 -- 94.0
X Ray Diffraction 3.6588 3.7577 -- 140 2820 0.346 0.3705 -- 96.0
X Ray Diffraction 3.7577 3.8683 -- 145 2856 0.3262 0.4361 -- 95.0
X Ray Diffraction 3.8683 3.9932 -- 201 2795 0.3036 0.3486 -- 96.0
X Ray Diffraction 3.9932 4.1359 -- 148 2864 0.2948 0.2856 -- 97.0
X Ray Diffraction 4.1359 4.3015 -- 143 2876 0.2794 0.3456 -- 97.0
X Ray Diffraction 4.3015 4.4973 -- 147 2899 0.2499 0.2858 -- 98.0
X Ray Diffraction 4.4973 4.7344 -- 143 2923 0.2552 0.2988 -- 98.0
X Ray Diffraction 4.7344 5.031 -- 136 2949 0.2426 0.3404 -- 98.0
X Ray Diffraction 5.031 5.4194 -- 145 2911 0.2453 0.3082 -- 98.0
X Ray Diffraction 5.4194 5.9647 -- 197 2866 0.2409 0.2917 -- 99.0
X Ray Diffraction 5.9647 6.8276 -- 164 2905 0.248 0.314 -- 98.0
X Ray Diffraction 6.8276 8.6013 -- 162 2898 0.24 0.2593 -- 98.0
X Ray Diffraction 8.6013 97.1068 -- 131 2942 0.2617 0.2967 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 94.09
Anisotropic B[1][1] -9.5105
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 4.0687
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 5.4419
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.073
f_dihedral_angle_d 19.603
f_bond_d 0.01
f_angle_d 1.226
f_plane_restr 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9249
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (PHENIX.REFINE)
MOSFLM data reduction
SCALA data scaling
PHASER phasing