X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 70.95 α = 90
b = 72.14 β = 100.64
c = 72.85 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS II -- 2001-03-06
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE ENRAF-NONIUS FR591 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 20 -- -- -- -- -- -- 18902 -- -- 23.65

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.1 20.0 -- -- -- 18902 1873 89.25 -- -- 0.168 0.214 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1 2.121 -- -- 343 0.252 -- -- 55.0
X Ray Diffraction 2.121 2.143 -- -- 374 0.235 -- -- 62.0
X Ray Diffraction 2.143 2.166 -- -- 377 0.248 -- -- 61.0
X Ray Diffraction 2.166 2.19 -- -- 438 0.238 -- -- 67.0
X Ray Diffraction 2.19 2.214 -- -- 414 0.216 -- -- 68.0
X Ray Diffraction 2.214 2.24 -- -- 433 0.235 -- -- 71.0
X Ray Diffraction 2.24 2.268 -- -- 453 0.24 -- -- 75.0
X Ray Diffraction 2.268 2.296 -- -- 489 0.219 -- -- 75.0
X Ray Diffraction 2.296 2.327 -- -- 458 0.221 -- -- 76.0
X Ray Diffraction 2.327 2.359 -- -- 475 0.216 -- -- 77.0
X Ray Diffraction 2.359 2.392 -- -- 494 0.205 -- -- 80.0
X Ray Diffraction 2.392 2.428 -- -- 494 0.194 -- -- 78.0
X Ray Diffraction 2.428 2.466 -- -- 477 0.2 -- -- 80.0
X Ray Diffraction 2.466 2.506 -- -- 518 0.186 -- -- 81.0
X Ray Diffraction 2.506 2.55 -- -- 502 0.199 -- -- 81.0
X Ray Diffraction 2.55 2.596 -- -- 534 0.203 -- -- 86.0
X Ray Diffraction 2.596 2.646 -- -- 535 0.199 -- -- 87.0
X Ray Diffraction 2.646 2.7 -- -- 536 0.197 -- -- 85.0
X Ray Diffraction 2.7 2.759 -- -- 504 0.197 -- -- 83.0
X Ray Diffraction 2.759 2.823 -- -- 531 0.179 -- -- 85.0
X Ray Diffraction 2.823 2.893 -- -- 533 0.177 -- -- 87.0
X Ray Diffraction 2.893 2.972 -- -- 547 0.198 -- -- 86.0
X Ray Diffraction 2.972 3.059 -- -- 537 0.173 -- -- 87.0
X Ray Diffraction 3.059 3.158 -- -- 549 0.183 -- -- 87.0
X Ray Diffraction 3.158 3.271 -- -- 524 0.154 -- -- 86.0
X Ray Diffraction 3.271 3.402 -- -- 563 0.149 -- -- 89.0
X Ray Diffraction 3.402 3.556 -- -- 548 0.134 -- -- 87.0
X Ray Diffraction 3.556 3.744 -- -- 540 0.124 -- -- 89.0
X Ray Diffraction 3.744 3.978 -- -- 564 0.128 -- -- 88.0
X Ray Diffraction 3.978 4.286 -- -- 536 0.114 -- -- 86.0
X Ray Diffraction 4.286 4.717 -- -- 547 0.123 -- -- 87.0
X Ray Diffraction 4.717 5.399 -- -- 549 0.118 -- -- 88.0
X Ray Diffraction 5.399 6.801 -- -- 573 0.16 -- -- 90.0
X Ray Diffraction 6.801 71.638 -- -- 540 0.173 -- -- 82.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.99
Anisotropic B[1][1] 3.931
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -4.529
Anisotropic B[2][2] -4.372
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.442
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.052
f_dihedral_angle_d 11.805
f_bond_d 0.004
f_plane_restr 0.002
f_angle_d 0.599
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2332
Nucleic Acid Atoms 0
Heterogen Atoms 30
Solvent Atoms 137

Software

Software
Software Name Purpose
PHENIX refinement
PDB_EXTRACT data extraction version: 3.000
X-PLOR phasing