2M8N

HIV-1 capsid monomer structure


SOLUTION SCATTERING - SOLUTION NMR Experimental Data


Structure 2M8N has been solved using multiple methods: SOLUTION SCATTERING - SOLUTION NMR

Experimental Details
Sample Conditions
Sample Contents0.5 mM [U-13C; U-15N; U-2H] entity, 1 mM EDTA, 50 mM sodium chloride, 1 mM DTT, 20 mM sodium phosphate, 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strengthn/a
pH6.5
Pressureambient
Temperature (K)308
Experiment(s):2D 1H-15N HSQC, 2D TROSY-Artsy, 2D 1H-15N R1, 2D 1H-15N R1, 2D 1H-15N R1r, 2D 1H-15N R1r, 2D 1H-15N HetNOE, 2D 1H-15N HetNOE, 2D 1H-13C HSQC, 2D 1H-13C HSQC aliphatic, 2D 1H-13C HSQC aromatic, 3D HNCO, 3D HNCACB, 3D HNCA, 3D HN(CO)CA, 3D 1H-15N NOESY
Spectrometer Information
Manufacturer Model Field Strength
Bruker Avance 800.0
Bruker Avance 500.0
NMR Refinement
Method simulated annealing
Details This is an ensemble refinement. The MODEL entries appear in groups of 5, representing 20 ensembles. Ensemble 1: MODEL 1, weight: 0.255 MODEL 2, weight: 0.230 MODEL 3, weight: 0.204 MODEL 4, weight: 0.176 MODEL 5, weight: 0.135 Ensemble 2: MODEL 6, weight: 0.120 MODEL 7, weight: 0.142 MODEL 8, weight: 0.173 MODEL 9, weight: 0.221 MODEL 10, weight: 0.344 Ensemble 3: MODEL 11, weight: 0.194 MODEL 12, weight: 0.197 MODEL 13, weight: 0.199 MODEL 14, weight: 0.202 MODEL 15, weight: 0.208 Ensemble 4: MODEL 16, weight: 0.104 MODEL 17, weight: 0.128 MODEL 18, weight: 0.164 MODEL 19, weight: 0.221 MODEL 20, weight: 0.383 Ensemble 5: MODEL 21, weight: 0.126 MODEL 22, weight: 0.147 MODEL 23, weight: 0.176 MODEL 24, weight: 0.220 MODEL 25, weight: 0.331 Ensemble 6: MODEL 26, weight: 0.133 MODEL 27, weight: 0.153 MODEL 28, weight: 0.179 MODEL 29, weight: 0.219 MODEL 30, weight: 0.316 Ensemble 7: MODEL 31, weight: 0.167 MODEL 32, weight: 0.178 MODEL 33, weight: 0.192 MODEL 34, weight: 0.212 MODEL 35, weight: 0.252 Ensemble 8: MODEL 36, weight: 0.073 MODEL 37, weight: 0.100 MODEL 38, weight: 0.141 MODEL 39, weight: 0.216 MODEL 40, weight: 0.470 Ensemble 9: MODEL 41, weight: 0.056 MODEL 42, weight: 0.082 MODEL 43, weight: 0.125 MODEL 44, weight: 0.209 MODEL 45, weight: 0.528 Ensemble 10: MODEL 46, weight: 0.067 MODEL 47, weight: 0.093 MODEL 48, weight: 0.135 MODEL 49, weight: 0.214 MODEL 50, weight: 0.491 Ensemble 11: MODEL 51, weight: 0.222 MODEL 52, weight: 0.213 MODEL 53, weight: 0.203 MODEL 54, weight: 0.191 MODEL 55, weight: 0.171 Ensemble 12: MODEL 56, weight: 0.153 MODEL 57, weight: 0.168 MODEL 58, weight: 0.188 MODEL 59, weight: 0.215 MODEL 60, weight: 0.275 Ensemble 13: MODEL 61, weight: 0.236 MODEL 62, weight: 0.221 MODEL 63, weight: 0.204 MODEL 64, weight: 0.185 MODEL 65, weight: 0.155 Ensemble 14: MODEL 66, weight: 0.249 MODEL 67, weight: 0.227 MODEL 68, weight: 0.204 MODEL 69, weight: 0.178 MODEL 70, weight: 0.141 Ensemble 15: MODEL 71, weight: 0.517 MODEL 72, weight: 0.279 MODEL 73, weight: 0.136 MODEL 74, weight: 0.056 MODEL 75, weight: 0.013 Ensemble 16: MODEL 76, weight: 0.224 MODEL 77, weight: 0.214 MODEL 78, weight: 0.203 MODEL 79, weight: 0.190 MODEL 80, weight: 0.169 Ensemble 17: MODEL 81, weight: 0.323 MODEL 82, weight: 0.257 MODEL 83, weight: 0.198 MODEL 84, weight: 0.142 MODEL 85, weight: 0.080 Ensemble 18: MODEL 86, weight: 0.134 MODEL 87, weight: 0.154 MODEL 88, weight: 0.180 MODEL 89, weight: 0.219 MODEL 90, weight: 0.313 Ensemble 19: MODEL 91, weight: 0.184 MODEL 92, weight: 0.190 MODEL 93, weight: 0.197 MODEL 94, weight: 0.206 MODEL 95, weight: 0.224 Ensemble 20: MODEL 96, weight: 0.175 MODEL 97, weight: 0.184 MODEL 98, weight: 0.195 MODEL 99, weight: 0.209 MODEL 100, weight: 0.238
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 480
Conformers Submitted Total Number 100
Representative Model Choice Rationale
1 lowest energy
Computation: NMR Software
# Classification Software Name Author
1 refinement version: 2.32 X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore
2 collection version: 1.3 TopSpin Bruker Biospin
3 data analysis version: 2.2.2 CCPN-Analysis (CCPN-Analysis)-Vranken, Boucher, Stevens..Laue.