SOLUTION NMR Experimental Data


Experimental Details
Sample Conditions
Sample Contents0.15-0.5mM [U-99% 13C; U-99% 15N] Pdcd4 MA-3 M-C; 25mM sodium phosphate; 100mM sodium chloride; 2.5mM DTT; 2.5mM TCEP; 0.05mM EDTA; 0.2mM AEBSF Protease Inhibitor; 0.02% sodium azide; 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength150
pH6.5
Pressureambient
Temperature (K)308
Experiment(s):3D CBCA(CO)NH, 3D HNCO, 3D TROSY HN(CO)CA, 3D HNCA, 3D IPAP TROSY HNCO
Sample Contents0.5mM [U-99% 13C; U-99% 15N] Pdcd4 MA-3 M-C; 25mM sodium phosphate; 100mM sodium chloride; 2.5mM DTT; 2.5mM TCEP; 0.05mM EDTA; 0.2mM AEBSF Protease Inhibitor; 0.02% sodium azide; 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength150
pH6.5
Pressureambient
Temperature (K)308
Experiment(s):2D 1H-15N HSQC, 3D 1H-15N NOESY-HSQC
Sample Contents0.25mM [U-99% 13C; U-99% 15N] Pdcd4 MA-3 M-C; 25mM sodium phosphate; 100mM sodium chloride; 2.5mM DTT; 2.5mM TCEP; 0.05mM EDTA; 0.2mM AEBSF Protease Inhibitor; 0.02% sodium azide; 10mg/ml Pf1 phage; 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength150
pH6.5
Pressureambient
Temperature (K)308
Experiment(s):3D IPAP TROSY HNCO
Spectrometer Information
Manufacturer Model Field Strength
Bruker DRX 600.0
Bruker Avance 800.0
NMR Refinement
Method HADDOCK
Details REFINED AS PART OF THE HADDOCK DOCKING PROTOCOL
NMR Ensemble Information
Conformer Selection Criteria acceptable RMSD to lowest HADDOCK score structure
Conformers Calculated Total Number 200
Conformers Submitted Total Number 73
Representative Model Choice Rationale
1 lowest haddock score
Computation: NMR Software
# Classification Software Name Author
1 collection version: 2.1 TOPSPIN Bruker Biospin
2 processing version: 2.1 TOPSPIN Bruker Biospin
3 chemical shift assignment version: 3.110 SPARKY Goddard
4 data analysis version: 3.110 SPARKY Goddard
5 docking version: 2.0 HADDOCK Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin
6 refinement version: 2.0 HADDOCK Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin
7 refinement X-PLOR_NIH Schwieters, Kuszewski, Tjandra and Clore