SOLUTION NMR Experimental Data


Experimental Details
Sample Conditions
Sample Contents1-2 mM [U-99% 15N] DNA polymerase iota UBM2, 4-8 mM Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength0.189
pH6.0
Pressureambient
Temperature (K)288
Experiment(s):3D 1H-15N NOESY, 3D 1H-15N TOCSY, 2D 1H-15N HSQC
Sample Contents1-2 mM [U-95% 13C; U-99% 15N] DNA polymerase iota UBM2, 4-8 mM Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength0.189
pH6.0
Pressureambient
Temperature (K)288
Experiment(s):3D HNCACB, 3D 1H-13C-filtered-13C-edited NOESY, 3D 1H-13C NOESY, 3D HCCH-COSY, 2D 1H-13C HSQC
Sample Contents4-8 mM DNA polymerase iota UBM2, 1-2 mM [U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength0.189
pH6.0
Pressureambient
Temperature (K)288
Experiment(s):3D 1H-15N TOCSY, 2D 1H-15N HSQC, 3D 1H-15N NOESY
Sample Contents4-8 mM DNA polymerase iota UBM2, 1-2 mM [U-95% 13C; U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength0.189
pH6.0
Pressureambient
Temperature (K)288
Experiment(s):3D 1H-13C NOESY, 3D HCCH-COSY, 2D 1H-13C HSQC, 3D 1H-13C-filtered-13C-edited NOESY, 3D HNCACB
Sample Contents1.7 mM DNA polymerase iota UBM2, 6.8 mM [U-95% 13C; U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
Solvent95% H2O/5% D2O
Ionic Strength0.189
pH6.0
Pressureambient
Temperature (K)288
Experiment(s):3D 1H-13C-filtered-13C-edited NOESY, 3D 1H-13C-AROMATIC NOESY
Spectrometer Information
Manufacturer Model Field Strength
Bruker Avance 900.0
Bruker Avance 600.0
Bruker Avance 750.0
NMR Refinement
Method molecular dynamics
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 200
Conformers Submitted Total Number 20
Representative Model Choice Rationale
1 lowest energy
Computation: NMR Software
# Classification Software Name Author
1 refinement version: 9 AMBER Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
2 collection version: 2.1 TOPSPIN Bruker Biospin
3 processing version: 2.1 TOPSPIN Bruker Biospin
4 geometry optimization version: 2k.2 Molmol Koradi, Billeter and Wuthrich
5 peak picking version: 1.0.4 UNIO'08 T. Herrmann
6 chemical shift assignment version: 1.0.4 UNIO'08 T. Herrmann
7 structure solution version: 1.0.4 UNIO'08 T. Herrmann
8 structure solution DYANA Guntert, Braun and Wuthrich
9 data analysis version: 1.8.4 CARA R. Keller
10 chemical shift assignment version: 1.8.4 CARA R. Keller