X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6
Temperature 292.0
Details PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 70.82 α = 90
b = 88.46 β = 90.32
c = 81 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 -- ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.3 30 95.0 0.08 -- -- 2.4 -- 232706 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.3 1.35 92.0 0.32 -- 2.8 2.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.3 15.0 -- -- -- 220849 11715 95.2 -- 0.157 0.156 0.176 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3 1.33 -- 805 15405 0.238 0.265 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 13.16
Anisotropic B[1][1] -0.31
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.46
Anisotropic B[2][2] 0.18
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.12
RMS Deviations
Key Refinement Restraint Deviation
r_symmetry_vdw_other 0.248
r_mcbond_it 2.115
r_angle_other_deg 0.702
r_nbd_other 0.21
r_symmetry_hbond_refined 0.147
r_nbtor_other 0.099
r_chiral_restr 0.087
r_mcangle_it 2.312
r_xyhbond_nbd_refined 0.137
r_dihedral_angle_2_deg 35.485
r_dihedral_angle_1_deg 7.423
r_symmetry_vdw_refined 0.156
r_nbd_refined 0.202
r_scangle_it 4.731
r_angle_refined_deg 1.212
r_dihedral_angle_4_deg 12.282
r_dihedral_angle_3_deg 11.291
r_bond_refined_d 0.013
r_gen_planes_refined 0.009
r_bond_other_d 0.002
r_scbond_it 3.754
r_gen_planes_other 0.001
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7377
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 1410

Software

Software
Software Name Purpose
REFMAC refinement version: 5.1.9999
DENZO data reduction
SCALEPACK data scaling