X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.66 α = 90
b = 66.41 β = 96.24
c = 78.59 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 mirrors 2001-10-10
Diffraction Radiation
Monochromator Protocol
mirror SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 79 99.7 0.0 0.038 -- 3.7 46823 46823 0.0 0.0 37.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.05 100.0 0.162 0.162 4.5 3.8 3276

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 79.06 0.0 0.0 46823 44470 2336 99.62 -- 0.20187 0.1998 0.24148 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.052 -- 181 3276 0.188 0.256 -- 99.63
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model isotropic
Mean Isotropic B 37.837
Anisotropic B[1][1] -0.07
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.01
Anisotropic B[2][2] 0.27
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.2
RMS Deviations
Key Refinement Restraint Deviation
r_bond_other_d 0.001
r_dihedral_angle_3_deg 16.746
r_mcbond_it 1.567
r_scangle_it 4.256
r_bond_refined_d 0.024
r_symmetry_vdw_refined 0.248
r_dihedral_angle_4_deg 17.457
r_nbtor_other 0.097
r_symmetry_hbond_refined 0.278
r_nbd_other 0.206
r_gen_planes_other 0.001
r_angle_other_deg 1.034
r_dihedral_angle_2_deg 39.448
r_nbtor_refined 0.194
r_mcangle_it 1.933
r_nbd_refined 0.23
r_xyhbond_nbd_other 0.013
r_xyhbond_nbd_refined 0.17
r_dihedral_angle_1_deg 7.33
r_symmetry_vdw_other 0.221
r_scbond_it 3.074
r_chiral_restr 0.128
r_mcbond_other 0.357
r_angle_refined_deg 1.991
r_gen_planes_refined 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5479
Nucleic Acid Atoms 0
Heterogen Atoms 10
Solvent Atoms 91

Software

Software
Software Name Purpose
REFMAC refinement version: 5.3.0008