X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 323.0
Details VAPOR DIFFUSION, HANGING DROP, temperature 323K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.06 α = 100.74
b = 63.01 β = 89.81
c = 73.69 γ = 90.2
Symmetry
Space Group P 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.1 -- ALS 8.2.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.47 43.2 92.7 -- -- -- -- -- 31120 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.48 72.36 -- 0.0 -- 24586 1237 93.28 0.228 0.22768 0.225 0.276 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.48 2.543 1280 60 1220 0.221 0.351 -- 66.67
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.821
Anisotropic B[1][1] 0.31
Anisotropic B[1][2] 0.2
Anisotropic B[1][3] -0.13
Anisotropic B[2][2] -1.53
Anisotropic B[2][3] -1.18
Anisotropic B[3][3] 0.78
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_2_deg 35.86
r_scbond_it 0.993
r_dihedral_angle_1_deg 6.08
r_dihedral_angle_3_deg 17.182
r_chiral_restr 0.094
r_xyhbond_nbd_refined 0.204
r_angle_refined_deg 1.435
r_nbtor_refined 0.329
r_symmetry_hbond_refined 0.225
r_bond_refined_d 0.012
r_mcbond_it 1.149
r_mcangle_it 1.867
r_dihedral_angle_4_deg 13.865
r_nbd_refined 0.252
r_scangle_it 1.6
r_gen_planes_refined 0.005
r_symmetry_vdw_refined 0.31
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3687
Nucleic Acid Atoms 0
Heterogen Atoms 46
Solvent Atoms 30

Software

Software
Software Name Purpose
DENZO data reduction
SCALEPACK data scaling
REFMAC refinement version: 5.2.0019
PDB_EXTRACT data extraction version: 2.000
HKL-2000 data collection
HKL-2000 data reduction
AMoRE phasing