X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Details VAPOR DIFFUSION, HANGING DROP

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.1 α = 78.73
b = 63.26 β = 88.04
c = 73.8 γ = 89.95
Symmetry
Space Group P 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.3.1 -- ALS 8.3.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.48 43.1 96.3 -- -- -- -- -- 31050 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.5 72.36 -- 0.0 -- 25198 1273 97.53 0.238 0.23807 0.235 0.292 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5 2.565 1784 80 1704 0.276 0.337 -- 92.53
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.206
Anisotropic B[1][1] -0.45
Anisotropic B[1][2] -0.08
Anisotropic B[1][3] -0.41
Anisotropic B[2][2] -1.22
Anisotropic B[2][3] 1.28
Anisotropic B[3][3] 1.2
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_2_deg 37.743
r_scangle_it 3.218
r_scbond_it 1.963
r_xyhbond_nbd_refined 0.172
r_dihedral_angle_3_deg 18.253
r_bond_refined_d 0.016
r_dihedral_angle_4_deg 15.065
r_symmetry_hbond_refined 0.122
r_gen_planes_refined 0.006
r_chiral_restr 0.106
r_symmetry_vdw_refined 0.264
r_angle_refined_deg 1.676
r_dihedral_angle_1_deg 6.138
r_mcbond_it 0.857
r_nbtor_refined 0.314
r_nbd_refined 0.23
r_mcangle_it 1.464
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3789
Nucleic Acid Atoms 0
Heterogen Atoms 50
Solvent Atoms 40

Software

Software
Software Name Purpose
DENZO data reduction
SCALEPACK data scaling
REFMAC refinement version: 5.2.0019
PDB_EXTRACT data extraction version: 2.000
HKL-2000 data collection
HKL-2000 data reduction
AMoRE phasing