X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.6
Temperature 295.0
Details 0.2M di-Ammonium Tartrate, 20% w/v Polyethylene Glycol 3350, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 50.31 α = 90
b = 82.49 β = 90
c = 118.97 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 128
2 128
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 4 -- 2005-04-07
CCD ADSC QUANTUM 4 -- 2005-04-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 6B 0.97903 PAL/PLS 6B
SYNCHROTRON PAL/PLS BEAMLINE 4A 1.0064 PAL/PLS 4A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 30 94.0 0.069 -- -- 4.1 46868 44051 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.86 94.0 0.351 -- -- 2.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 1.8 20.0 -- 0.0 46868 43922 2193 94.2 0.351 -- 0.2183 0.2472 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.81 821 44 777 0.389 0.377 -- --
X Ray Diffraction 1.81 1.83 831 36 795 0.382 0.322 -- --
X Ray Diffraction 1.83 1.84 899 41 858 0.359 0.358 -- --
X Ray Diffraction 1.84 1.86 911 36 875 0.34 0.288 -- --
X Ray Diffraction 1.86 1.88 911 33 878 0.343 0.334 -- --
X Ray Diffraction 1.88 1.89 919 40 879 0.326 0.332 -- --
X Ray Diffraction 1.89 1.91 936 54 882 0.335 0.332 -- --
X Ray Diffraction 1.91 1.93 977 44 933 0.32 0.308 -- --
X Ray Diffraction 1.93 1.95 954 42 912 0.313 0.349 -- --
X Ray Diffraction 1.95 1.97 962 44 918 0.304 0.323 -- --
X Ray Diffraction 1.97 1.99 972 58 914 0.313 0.324 -- --
X Ray Diffraction 1.99 2.01 1024 60 964 0.292 0.32 -- --
X Ray Diffraction 2.01 2.03 984 67 917 0.272 0.28 -- --
X Ray Diffraction 2.03 2.05 986 63 923 0.272 0.284 -- --
X Ray Diffraction 2.05 2.08 990 46 944 0.27 0.293 -- --
X Ray Diffraction 2.08 2.1 1047 52 995 0.246 0.305 -- --
X Ray Diffraction 2.1 2.13 994 50 944 0.243 0.234 -- --
X Ray Diffraction 2.13 2.16 997 53 944 0.239 0.345 -- --
X Ray Diffraction 2.16 2.19 1029 59 970 0.255 0.333 -- --
X Ray Diffraction 2.19 2.22 993 52 941 0.237 0.278 -- --
X Ray Diffraction 2.22 2.25 1057 49 1008 0.224 0.249 -- --
X Ray Diffraction 2.25 2.29 1045 37 1008 0.221 0.261 -- --
X Ray Diffraction 2.29 2.32 1032 38 994 0.223 0.249 -- --
X Ray Diffraction 2.32 2.36 1049 54 995 0.227 0.277 -- --
X Ray Diffraction 2.36 2.41 1037 45 992 0.22 0.245 -- --
X Ray Diffraction 2.41 2.45 1024 52 972 0.212 0.259 -- --
X Ray Diffraction 2.45 2.5 1061 55 1006 0.209 0.235 -- --
X Ray Diffraction 2.5 2.56 1055 42 1013 0.206 0.207 -- --
X Ray Diffraction 2.56 2.62 1038 52 986 0.207 0.294 -- --
X Ray Diffraction 2.62 2.68 1068 54 1014 0.23 0.277 -- --
X Ray Diffraction 2.68 2.75 1072 47 1025 0.233 0.259 -- --
X Ray Diffraction 2.75 2.83 1066 55 1011 0.221 0.293 -- --
X Ray Diffraction 2.83 2.92 1056 63 993 0.222 0.238 -- --
X Ray Diffraction 2.92 3.03 1083 56 1027 0.231 0.297 -- --
X Ray Diffraction 3.03 3.15 1103 60 1043 0.215 0.263 -- --
X Ray Diffraction 3.15 3.29 1066 62 1004 0.209 0.247 -- --
X Ray Diffraction 3.29 3.47 1090 66 1024 0.213 0.239 -- --
X Ray Diffraction 3.47 3.68 1103 54 1049 0.202 0.218 -- --
X Ray Diffraction 3.68 3.96 1103 48 1055 0.186 0.237 -- --
X Ray Diffraction 3.96 4.36 1121 48 1073 0.159 0.17 -- --
X Ray Diffraction 4.36 4.98 1127 66 1061 0.155 0.189 -- --
X Ray Diffraction 4.98 6.24 1138 48 1090 0.2 0.236 -- --
X Ray Diffraction 6.24 20.0 1191 68 1123 0.178 0.188 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 31.402
Anisotropic B[1][1] -2.271
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 4.298
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.027
RMS Deviations
Key Refinement Restraint Deviation
c_bond_d 0.0052
c_angle_d 1.3121
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3210
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 298

Software

Software
Software Name Purpose
DENZO data reduction
SCALEPACK data scaling
RESOLVE phasing version: 2.08
CNS refinement
PDB_EXTRACT data extraction version: 1.701
HKL-2000 data reduction
SOLVE phasing