X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.3
Details PH 7.30

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 68.94 α = 90
b = 71.66 β = 100.1
c = 71.84 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RIGAKU CCD CONFOCAL MULTILAYER --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH3R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 33.93 95.4 0.08 -- -- 1.96 -- 17595 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.1 2.14 86.3 0.26 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.14 33.94 -- -- -- 17374 947 95.6 -- 0.18 0.176 0.246 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.14 2.19 -- 66 1147 0.227 0.292 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.71
Anisotropic B[1][1] 2.39
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.41
Anisotropic B[2][2] -0.59
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.94
RMS Deviations
Key Refinement Restraint Deviation
r_nbtor_other 0.085
r_nbtor_refined 0.182
r_dihedral_angle_2_deg 34.851
r_symmetry_vdw_other 0.283
r_bond_refined_d 0.011
r_dihedral_angle_4_deg 19.572
r_gen_planes_refined 0.004
r_angle_other_deg 0.857
r_mcangle_it 0.078
r_nbd_refined 0.19
r_angle_refined_deg 1.333
r_dihedral_angle_1_deg 6.779
r_scangle_it 0.097
r_gen_planes_other 0.001
r_bond_other_d 0.002
r_scbond_it 0.08
r_dihedral_angle_3_deg 14.628
r_symmetry_vdw_refined 0.141
r_mcbond_it 0.058
r_chiral_restr 0.084
r_symmetry_hbond_refined 0.177
r_xyhbond_nbd_refined 0.107
r_nbd_other 0.196
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2362
Nucleic Acid Atoms 0
Heterogen Atoms 14
Solvent Atoms 327

Software

Software
Software Name Purpose
REFMAC refinement version: 5.2.0019C
d*TREK data reduction
d*TREK data scaling
IN-HOUSE phasing version: SOFTWARE