X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 131.24 α = 90
b = 223.06 β = 90
c = 86.36 γ = 90
Symmetry
Space Group C 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA -- SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 15 98.9 0.09 -- -- 3.1 -- 136583 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.7 15.0 -- -- -- 132929 3485 98.5 -- 0.191 0.191 0.213 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7 1.74 -- 268 9756 0.269 0.321 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 17.08
Anisotropic B[1][1] 0.46
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.2
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.26
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_4_deg 12.686
r_scangle_it 2.42
r_dihedral_angle_2_deg 32.281
r_angle_refined_deg 1.159
r_dihedral_angle_1_deg 5.435
r_gen_planes_refined 0.004
r_chiral_restr 0.074
r_mcangle_it 0.899
r_symmetry_hbond_refined 0.284
r_dihedral_angle_3_deg 12.491
r_scbond_it 1.465
r_mcbond_it 0.593
r_bond_refined_d 0.008
r_symmetry_vdw_refined 0.253
r_nbtor_refined 0.304
r_xyhbond_nbd_refined 0.104
r_nbd_refined 0.194
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7915
Nucleic Acid Atoms 0
Heterogen Atoms 132
Solvent Atoms 910

Software

Software
Software Name Purpose
REFMAC refinement version: 5.2.0005
MOSFLM data reduction
SCALA data scaling
AMoRE phasing