X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 158.95 α = 90
b = 170.27 β = 100.93
c = 239.2 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- 2004-02-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-2 -- ESRF ID14-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.15 30 89.0 0.11 -- -- 2.5 -- 97782 -- 2.6 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.15 3.26 81.0 0.41 -- 2.6 2.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.15 30.0 -- -- -- 94691 1925 89.6 -- 0.227 0.227 0.247 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.15 3.23 -- 135 6358 0.356 0.384 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 64.8
Anisotropic B[1][1] 5.38
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 1.4
Anisotropic B[2][2] -1.9
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -2.95
RMS Deviations
Key Refinement Restraint Deviation
r_xyhbond_nbd_other 0.178
r_dihedral_angle_1_deg 6.176
r_mcbond_other 0.327
r_symmetry_vdw_refined 0.302
r_scbond_it 1.102
r_dihedral_angle_2_deg 35.566
r_mcbond_it 0.556
r_gen_planes_other 0.002
r_nbd_other 0.209
r_bond_refined_d 0.008
r_chiral_restr 0.105
r_gen_planes_refined 0.003
r_angle_refined_deg 1.518
r_dihedral_angle_3_deg 20.616
r_xyhbond_nbd_refined 0.181
r_dihedral_angle_4_deg 18.105
r_scangle_it 1.898
r_mcangle_it 1.013
r_angle_other_deg 0.948
r_symmetry_hbond_refined 0.403
r_bond_other_d 0.002
r_nbd_refined 0.216
r_symmetry_vdw_other 0.251
r_nbtor_other 0.096
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 35292
Nucleic Acid Atoms 0
Heterogen Atoms 804
Solvent Atoms 0

Software

Software
Software Name Purpose
REFMAC refinement version: 5.1.9999
DENZO data reduction
SCALEPACK data scaling