X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 6
Temperature 301.0
Details pH 6.00, VAPOR DIFFUSION, temperature 301.00K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 113.72 α = 90
b = 113.72 β = 90
c = 136.54 γ = 120
Symmetry
Space Group P 64 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 278
2 278
3 278
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE Y.AMEMIYA -- 1988-01-01
FILM -- -- 1988-01-01
STORAGE PHOSPHORS KODAK -- 1988-01-01
Diffraction Radiation
Monochromator Protocol
-- --
-- --
-- --
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CHESS -- CHESS --
SYNCHROTRON SSRL -- SSRL --
SYNCHROTRON PHOTON FACTORY -- Photon Factory --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3 20 95.0 -- 0.08 -- -- -- 10688 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.0 3.14 98.8 -- 0.495 2.24 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MIR 3.0 10.0 -- 1.0 -- -- -- 81.7 0.215 -- -- -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 33.0
RMS Deviations
Key Refinement Restraint Deviation
p_angle_d 0.025
p_bond_d 0.012
p_singtor_nbd 0.115
p_multtor_nbd 0.168
p_plane_restr 0.002
p_chiral_restr 0.247
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 1639
Heterogen Atoms 0
Solvent Atoms 0

Software

Software
Software Name Purpose
PHARE model building
DENMOD model building
NUCLIN/PROFFT refinement
MODIFIED refinement version: BY Z.OTWINOWSKI
DENZO data reduction
SCALEPACK data scaling
MLPHARE phasing
DM phasing
NUCLIN refinement
PROFFT refinement version: (MODIFIED BY Z.OTWINOWSKI)