Macromolecule Annotations for the Entities in PDB 3OTO

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B1 3otoB01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like protein; domain 1
B2 3otoB02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 3otoC01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 3otoC02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 3otoD01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 3otoD02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 3otoE01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 3otoE02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 3otoF00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 3otoG00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H1 3otoH01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1
H2 3otoH02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 3otoI00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
K 3otoK00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 3otoL00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 3otoM01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 3otoM02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 3otoN00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 3otoO00 Mainly Alpha Orthogonal Bundle Helix Hairpins
R 3otoR00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 3otoS00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 3otoT00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S rRNA (3OTO:A)
  • none
  • none
  • none
B 30S RIBOSOMAL PROTEIN S2 (3OTO:B)
C 30S RIBOSOMAL PROTEIN S3 (3OTO:C)
D 30S RIBOSOMAL PROTEIN S4 (3OTO:D)
E 30S RIBOSOMAL PROTEIN S5 (3OTO:E)
F 30S RIBOSOMAL PROTEIN S6 (3OTO:F)
G 30S RIBOSOMAL PROTEIN S7 (3OTO:G)
H 30S RIBOSOMAL PROTEIN S8 (3OTO:H)
I 30S RIBOSOMAL PROTEIN S9 (3OTO:I)
J 30S RIBOSOMAL PROTEIN S10 (3OTO:J)
K 30S RIBOSOMAL PROTEIN S11 (3OTO:K)
L 30S RIBOSOMAL PROTEIN S12 (3OTO:L)
M 30S RIBOSOMAL PROTEIN S13 (3OTO:M)
N 30S RIBOSOMAL PROTEIN S14 (3OTO:N)
O 30S RIBOSOMAL PROTEIN S15 (3OTO:O)
P 30S RIBOSOMAL PROTEIN S16 (3OTO:P)
Q 30S RIBOSOMAL PROTEIN S17 (3OTO:Q)
R 30S RIBOSOMAL PROTEIN S18 (3OTO:R)
S 30S RIBOSOMAL PROTEIN S19 (3OTO:S)
T 30S RIBOSOMAL PROTEIN S20 (3OTO:T)
U 30S RIBOSOMAL PROTEIN THX (3OTO:U)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description