Macromolecule Annotations for the Entities in PDB 2HHH

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
B7-240 d2hhhb1 Alpha and beta proteins (a/b) Flavodoxin-like Ribosomal protein S2 Ribosomal protein S2 Ribosomal protein S2 Thermus thermophilus [TaxId: 274]
C2-106 d2hhhc1 Alpha and beta proteins (a+b) Alpha-lytic protease prodomain-like Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 N-terminal domain Thermus thermophilus [TaxId: 274]
C107-207 d2hhhc2 Alpha and beta proteins (a+b) Ribosomal protein S3 C-terminal domain Ribosomal protein S3 C-terminal domain Ribosomal protein S3 C-terminal domain Ribosomal protein S3 C-terminal domain Thermus thermophilus [TaxId: 274]
D2-209 d2hhhd1 Alpha and beta proteins (a+b) Alpha-L RNA-binding motif Alpha-L RNA-binding motif Ribosomal protein S4 Ribosomal protein S4 Thermus thermophilus [TaxId: 274]
E74-154 d2hhhe1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Translational machinery components Ribosomal protein S5, C-terminal domain Thermus thermophilus [TaxId: 274]
E5-73 d2hhhe2 Alpha and beta proteins (a+b) dsRBD-like dsRNA-binding domain-like Ribosomal S5 protein, N-terminal domain Ribosomal S5 protein, N-terminal domain Thermus thermophilus [TaxId: 274]
F1-101 d2hhhf1 Alpha and beta proteins (a+b) Ferredoxin-like Ribosomal protein S6 Ribosomal protein S6 Ribosomal protein S6 Thermus thermophilus [TaxId: 274]
G2-156 d2hhhg1 All alpha proteins Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7 Thermus thermophilus [TaxId: 274]
H1-138 d2hhhh1 Alpha and beta proteins (a+b) Ribosomal protein S8 Ribosomal protein S8 Ribosomal protein S8 Ribosomal protein S8 Thermus thermophilus [TaxId: 274]
I2-128 d2hhhi1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Translational machinery components Ribosomal protein S9 Thermus thermophilus [TaxId: 274]
J3-100 d2hhhj1 Alpha and beta proteins (a+b) Ferredoxin-like Ribosomal protein S10 Ribosomal protein S10 Ribosomal protein S10 Thermus thermophilus [TaxId: 274]
K11-129 d2hhhk1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein S11 Thermus thermophilus [TaxId: 274]
L5-122 d2hhhl1 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like Ribosomal protein S12 Thermus thermophilus [TaxId: 274]
M2-126 d2hhhm1 All alpha proteins S13-like H2TH domain S13-like H2TH domain Ribosomal protein S13 Ribosomal protein S13 Thermus thermophilus [TaxId: 274]
N2-61 d2hhhn1 Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein S14 Ribosomal protein S14 Thermus thermophilus [TaxId: 274]
O2-89 d2hhho1 All alpha proteins S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain Ribosomal protein S15 Ribosomal protein S15 Thermus thermophilus [TaxId: 274]
P1-83 d2hhhp1 Alpha and beta proteins (a+b) Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16 Thermus thermophilus [TaxId: 274]
Q2-105 d2hhhq1 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like Ribosomal protein S17 Thermus thermophilus [TaxId: 274]
R16-88 d2hhhr1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein S18 Ribosomal protein S18 Ribosomal protein S18 Thermus thermophilus [TaxId: 274]
S2-81 d2hhhs1 Alpha and beta proteins (a+b) Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19 Thermus thermophilus [TaxId: 274]
T8-106 d2hhht1 All alpha proteins Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20 Ribosomal protein S20 Thermus thermophilus [TaxId: 274]
U2-25 d2hhhu1 Peptides Arg-rich RNA binding peptides 30S ribosomal protein THX 30S ribosomal protein THX 30S ribosomal protein THX Thermus thermophilus [TaxId: 274]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B2 2hhhB02 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1 2hhhC01 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3
C2 2hhhC02 Alpha Beta 2-Layer Sandwich Ribosomal protein S3 C-terminal domain
D1 2hhhD01 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1
D2 2hhhD02 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA- pckA Intergenic Region; Chain A Structural Genomics Hypothetical 15.5 Kd Protein In Mrca- pcka Intergenic Region; Chain
E1 2hhhE01 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain
E2 2hhhE02 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
F 2hhhF00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G 2hhhG00 Mainly Alpha Orthogonal Bundle Ribosomal Protein S7 Ribosomal Protein S7;
H1 2hhhH01 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1
H2 2hhhH02 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1
I 2hhhI00 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2
J 2hhhJ00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
K 2hhhK00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
L 2hhhL00 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
M1 2hhhM01 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein; domain 3
M2 2hhhM02 Few Secondary Structures Irregular 30s ribosomal protein s13; domain 2 30s ribosomal protein s13, domain 2
N 2hhhN00 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N
O 2hhhO00 Mainly Alpha Orthogonal Bundle Helix Hairpins
P 2hhhP00 Alpha Beta 2-Layer Sandwich S16 Ribosomal Protein; Chain: A;
R 2hhhR00 Few Secondary Structures Irregular 30s Ribosomal Protein S18 30s Ribosomal Protein S18
S 2hhhS00 Alpha Beta 2-Layer Sandwich 30s Ribosomal Protein S19; Chain A 30s Ribosomal Protein S19; Chain A
T 2hhhT00 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S ribosomal RNA (2HHH:A)
  • none
  • none
  • none
B 30S ribosomal protein S2 (2HHH:B)
C 30S ribosomal protein S3 (2HHH:C)
D 30S ribosomal protein S4 (2HHH:D)
E 30S ribosomal protein S5 (2HHH:E)
F 30S ribosomal protein S6 (2HHH:F)
G 30S ribosomal protein S7 (2HHH:G)
H 30S ribosomal protein S8 (2HHH:H)
I 30S ribosomal protein S9 (2HHH:I)
J 30S ribosomal protein S10 (2HHH:J)
K 30S ribosomal protein S11 (2HHH:K)
L 30S ribosomal protein S12 (2HHH:L)
M 30S ribosomal protein S13 (2HHH:M)
N 30S ribosomal protein S14 (2HHH:N)
O 30S ribosomal protein S15 (2HHH:O)
P 30S ribosomal protein S16 (2HHH:P)
Q 30S ribosomal protein S17 (2HHH:Q)
R 30S ribosomal protein S18 (2HHH:R)
S 30S ribosomal protein S19 (2HHH:S)
T 30S ribosomal protein S20 (2HHH:T)
U 30S ribosomal protein Thx (2HHH:U)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description