Macromolecule Annotations for the Entities in PDB 2E2I

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A3-1449 d2e2ia1 Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA- polymerase beta and beta-prime subunits of DNA dependent RNA- polymerase RNA-polymerase beta-prime RBP1 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B20-1224 d2e2ib1 Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA- polymerase beta and beta-prime subunits of DNA dependent RNA- polymerase RNA-polymerase beta RBP2 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C3-37,C173-268 d2e2ic1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RPB3 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C42-172 d2e2ic2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RPB3 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E3-143 d2e2ie1 Alpha and beta proteins (a/b) Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E144-215 d2e2ie2 Alpha and beta proteins (a+b) RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5 Eukaryotic RPB5 C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F72-155 d2e2if1 All alpha proteins RPB6/omega subunit-like RPB6/omega subunit-like RPB6 RPB6 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H2-146 d2e2ih1 All beta proteins OB-fold Nucleic acid-binding proteins RNA polymerase subunit RBP8 RNA polymerase subunit RBP8 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I2-49 d2e2ii1 Small proteins Rubredoxin-like Zinc beta-ribbon Transcriptional factor domain RBP9 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I50-120 d2e2ii2 Small proteins Rubredoxin-like Zinc beta-ribbon Transcriptional factor domain RBP9 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J1-65 d2e2ij1 All alpha proteins DNA/RNA-binding 3-helical bundle RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K1-114 d2e2ik1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RBP11/RpoL RPB11 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L25-70 d2e2il1 Small proteins Rubredoxin-like RNA polymerase subunits RBP12 subunit of RNA polymerase II RBP12 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
R 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3' (2E2I:R)
  • none
  • none
  • none
T 28-MER DNA template strand (2E2I:T)
  • none
  • none
  • none
N 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)- 3' (2E2I:N)
  • none
  • none
  • none
A DNA-directed RNA polymerase II largest subunit (2E2I:A)
B DNA-directed RNA polymerase II 140 kDa polypeptide (2E2I:B)
C DNA-directed RNA polymerase II 45 kDa polypeptide (2E2I:C)
E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (2E2I:E)
F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (2E2I:F)
H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (2E2I:H)
I DNA-directed RNA polymerase II subunit 9 (2E2I:I)
J DNA-directed RNA polymerases I/II/III subunit 10 (2E2I:J)
K DNA-directed RNA polymerase II 13.6 kDa polypeptide (2E2I:K)
L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (2E2I:L)

Protein Modification Annotation

Type PDB Residue Nr. Description