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158549
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
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Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1SC6
Crystal Structure of W139G D-3-Phosphoglycerate dehydrogenase complexed with NAD+
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
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FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
Macromolecule Annotations for the Entities in PDB 1SC6
Domain Annotation: SCOP Classification
SCOP Database (version: 1.75) Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
A108-295
d1sc6a1
Alpha and beta proteins (a/b)
NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains
Formate/glycerate dehydrogenases, NAD-domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
A7-107,A296-326
d1sc6a2
Alpha and beta proteins (a/b)
Flavodoxin-like
Formate/glycerate dehydrogenase catalytic domain- like
Formate/glycerate dehydrogenases, substrate- binding domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
A327-410
d1sc6a3
Alpha and beta proteins (a+b)
Ferredoxin-like
ACT-like
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Escherichia coli [TaxId: 562]
B108-295
d1sc6b1
Alpha and beta proteins (a/b)
NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains
Formate/glycerate dehydrogenases, NAD-domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
B7-107,B296-326
d1sc6b2
Alpha and beta proteins (a/b)
Flavodoxin-like
Formate/glycerate dehydrogenase catalytic domain- like
Formate/glycerate dehydrogenases, substrate- binding domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
B327-410
d1sc6b3
Alpha and beta proteins (a+b)
Ferredoxin-like
ACT-like
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Escherichia coli [TaxId: 562]
C108-291
d1sc6c1
Alpha and beta proteins (a/b)
NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains
Formate/glycerate dehydrogenases, NAD-domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
C9-107,C299-326
d1sc6c2
Alpha and beta proteins (a/b)
Flavodoxin-like
Formate/glycerate dehydrogenase catalytic domain- like
Formate/glycerate dehydrogenases, substrate- binding domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
C327-410
d1sc6c3
Alpha and beta proteins (a+b)
Ferredoxin-like
ACT-like
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Escherichia coli [TaxId: 562]
D108-291
d1sc6d1
Alpha and beta proteins (a/b)
NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains
Formate/glycerate dehydrogenases, NAD-domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
D7-107,D296-326
d1sc6d2
Alpha and beta proteins (a/b)
Flavodoxin-like
Formate/glycerate dehydrogenase catalytic domain- like
Formate/glycerate dehydrogenases, substrate- binding domain
Phosphoglycerate dehydrogenase
Escherichia coli [TaxId: 562]
D327-410
d1sc6d3
Alpha and beta proteins (a+b)
Ferredoxin-like
ACT-like
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Phosphoglycerate dehydrogenase, regulatory (C- terminal) domain
Escherichia coli [TaxId: 562]
Domain Annotation: CATH
CATH Database (version 4.0.0) Homepage
Chains
Domain
Class
Architecture
Topology
Homology
A1
1sc6A01
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
A2
1sc6A02
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
A3
1sc6A03
Alpha Beta
2-Layer Sandwich
Alpha-Beta Plaits
B1
1sc6B01
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
B2
1sc6B02
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
B3
1sc6B03
Alpha Beta
2-Layer Sandwich
Alpha-Beta Plaits
C1
1sc6C01
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
C2
1sc6C02
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
C3
1sc6C03
Alpha Beta
2-Layer Sandwich
Alpha-Beta Plaits
D1
1sc6D01
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
D2
1sc6D02
Alpha Beta
3-Layer(aba) Sandwich
Rossmann fold
NAD(P)-binding Rossmann-like Domain
D3
1sc6D03
Alpha Beta
2-Layer Sandwich
Alpha-Beta Plaits
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A,B,C,D
D-3-phosphoglycerate dehydrogenase (1SC6:A,B,C,D)
Phosphoglycerate Dehydrogenase Activity
Oxidoreductase Activity
Oxidoreductase Activity Acting On the Ch Oh Group of Donors NAD or Nadp As Acceptor
Hydroxypyruvate Reductase Activity
Glyoxylate Reductase (nadp) Activity
Identical Protein Binding
2 Hydroxyglutarate Dehydrogenase Activity
NAD Binding
Serine Binding
L Serine Biosynthetic Process
Cellular Amino Acid Biosynthetic Process
Oxidation Reduction Process
Cytosol
Protein Modification Annotation
Type
PDB Residue Nr.
Description