Macromolecule Annotations for the Entities in PDB 1Q86

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1q861_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1q862_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
3 d1q863_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
4 d1q864_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
C91-237 d1q86c1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-90 d1q86c2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1q86d_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
E d1q86e_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1q86f_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
G1-79 d1q86g1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
G80-172 d1q86g2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1q86h_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
I d1q86i_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1q86j_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
K d1q86k_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
L d1q86l_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
M d1q86m_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1q86n_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1q86o_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1q86p_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1q86q_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
R d1q86r_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
S d1q86s_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1q86t_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
U d1q86u_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1q86v_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
W d1q86w_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
X d1q86x_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1q86y_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1q86z_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1q86100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1q86200 Mainly Beta Single Sheet N-terminal domain of TfIIb
3 1q86300 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
4 1q86400 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
C1 1q86C01 Mainly Beta Roll SH3 type barrels.
C2 1q86C02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
C3 1q86C03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
D1 1q86D01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
D2 1q86D02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
D3 1q86D03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
E 1q86E00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
F 1q86F00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
G1 1q86G01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
G2 1q86G02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
H 1q86H00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
I 1q86I00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1q86J00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
K 1q86K00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
L 1q86L00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
M1 1q86M01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
M2 1q86M02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
N 1q86N00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
O 1q86O00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
P 1q86P00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
Q1 1q86Q01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
Q2 1q86Q02 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
Q3 1q86Q03 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
R 1q86R00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
S 1q86S00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
T 1q86T00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
U 1q86U00 Mainly Beta Roll SH3 type barrels.
V 1q86V00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
W 1q86W00 Mainly Alpha Orthogonal Bundle Helix Hairpins
X1 1q86X01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
X2 1q86X02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Y 1q86Y00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 23S ribosomal rna (1Q86:A)
  • none
  • none
  • none
B 5S ribosomal RNA (1Q86:B)
  • none
  • none
  • none
5,6 CCA-phenylalanine-cariotic-acid-biotin (1Q86:5,6)
  • none
  • none
  • none
C 50S ribosomal protein L2P (1Q86:C)
D 50S ribosomal protein L3P (1Q86:D)
E 50S ribosomal protein L4E (1Q86:E)
F 50S ribosomal protein L5P (1Q86:F)
G 50S ribosomal protein L6P (1Q86:G)
H 50S ribosomal protein L7Ae (1Q86:H)
I Acidic ribosomal protein P0 homolog (1Q86:I)
J L10 Ribosomal Protein (1Q86:J)
K 50S ribosomal protein L13P (1Q86:K)
L 50S ribosomal protein L14P (1Q86:L)
M 50S ribosomal protein L15P (1Q86:M)
N L15 Ribosomal Protein (1Q86:N)
O 50S ribosomal protein L18P (1Q86:O)
P 50S ribosomal protein L18e (1Q86:P)
Q 50S ribosomal protein L19E (1Q86:Q)
R 50S ribosomal protein L21e (1Q86:R)
S 50S ribosomal protein L22P (1Q86:S)
T 50S ribosomal protein L23P (1Q86:T)
U 50S ribosomal protein L24P (1Q86:U)
V 50S ribosomal protein L24E (1Q86:V)
W 50S ribosomal protein L29P (1Q86:W)
X 50S ribosomal protein L30P (1Q86:X)
Y 50S ribosomal protein L31e (1Q86:Y)
Z 50S ribosomal protein L32E (1Q86:Z)
1 L37Ae 50S ribosomal protein (1Q86:1)
2 50S ribosomal protein L37e (1Q86:2)
3 50S ribosomal protein L39e (1Q86:3)
4 50S ribosomal protein L44E (1Q86:4)

Protein Modification Annotation

Type PDB Residue Nr. Description