Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site.

Pargellis, C; Tong, L; Churchill, L; Cirillo, P.F; Gilmore, T; Graham, A.G; Grob, P.M; Hickey, E.R; Moss, N; Pav, S; Regan, J.

142220 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

1KV1

p38 MAP Kinase in Complex with Inhibitor 1

Macromolecule Annotations for the Entities in PDB 1KV1

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species
A	d1kv1a_	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	Protein kinases, catalytic subunit	MAP kinase p38	Human (Homo sapiens) [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains	Domain	Class	Architecture	Topology	Homology
A1	1kv1A01	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase; domain 1	Phosphorylase Kinase; domain 1
A2	1kv1A02	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase); domain 1	Transferase(Phosphotransferase) domain 1

Protein Family Annotation Pfam Database Homepage

Chains	Pfam Accession	Pfam Identifier	Pfam Description	Type	Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	p38 MAP kinase (1KV1:A)	Nucleotide Binding Protein Kinase Activity Protein Serine/threonine Kinase Activity Map Kinase Activity Map Kinase Kinase Activity Protein Binding ATP Binding Kinase Activity Transferase Activity Enzyme Binding Protein Phosphatase Binding Mitogen Activated Protein Kinase P38 Binding Nfat Protein Binding	DNA Damage Checkpoint Activation of Mapk Activity Cell Morphogenesis Cartilage Condensation Angiogenesis Placenta Development Chondrocyte Differentiation Positive Regulation of Cytokine Secretion Involved in Immune Response Glucose Metabolic Process Transcription DNA Templated Regulation of Transcription DNA Templated Regulation of Transcription by RNA Polymerase Ii Protein Phosphorylation Apoptotic Process Chemotaxis Cellular Response to DNA Damage Stimulus Signal Transduction Cell Surface Receptor Signaling Pathway Transmembrane Receptor Protein Serine/threonine Kinase Signaling Pathway Skeletal Muscle Tissue Development Positive Regulation of Gene Expression Positive Regulation of Macrophage Chemotaxis Positive Regulation of Myotube Differentiation Myoblast Differentiation Involved in Skeletal Muscle Regeneration Phosphorylation Peptidyl Serine Phosphorylation Fatty Acid Oxidation Regulation of Ossification Osteoclast Differentiation Positive Regulation of Cyclase Activity Lipopolysaccharide Mediated Signaling Pathway Response to Muramyl Dipeptide Response to Lipopolysaccharide Intracellular Signal Transduction Cellular Response to Vascular Endothelial Growth Factor Stimulus Response to Muscle Stretch P38mapk Cascade Positive Regulation of Protein Import Into Nucleus Signal Transduction in Response to DNA Damage Neutrophil Degranulation Positive Regulation of Blood Vessel Endothelial Cell Migration Positive Regulation of Erythrocyte Differentiation Positive Regulation of Myoblast Differentiation Positive Regulation of Transcription by RNA Polymerase Ii Positive Regulation of Glucose Import Vascular Endothelial Growth Factor Receptor Signaling Pathway Striated Muscle Cell Differentiation Positive Regulation of Muscle Cell Differentiation Positive Regulation of Cardiac Muscle Cell Proliferation 3' Utr Mediated MRNA Stabilization Cellular Response to Lipopolysaccharide Cellular Response to Lipoteichoic Acid Cellular Response to Tumor Necrosis Factor Cellular Response to Ionizing Radiation Negative Regulation of Canonical Wnt Signaling Pathway Positive Regulation of Brown Fat Cell Differentiation Stress Induced Premature Senescence Cellular Response to Virus Regulation of Cytokine Production Involved in Inflammatory Response Positive Regulation of Myoblast Fusion Regulation of Signal Transduction by P53 Class Mediator Positive Regulation of Metallopeptidase Activity Positive Regulation of Reactive Oxygen Species Metabolic Process Positive Regulation of Interleukin 12 Secretion	Spindle Pole Extracellular Region Cell Nucleus Nucleoplasm Cytoplasm Mitochondrion Cytosol Nuclear Speck Secretory Granule Lumen Ficolin 1 Rich Granule Lumen

Protein Modification Annotation

Type	PDB Residue Nr.	Description

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.

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142220 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

1KV1

p38 MAP Kinase in Complex with Inhibitor 1

Macromolecule Annotations for the Entities in PDB 1KV1

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Protein Family Annotation Pfam Database Homepage

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation