Citations in PubMed

Primary Citation PubMed: 23661642 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 3

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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RBR E3 ubiquitin ligases: new structures, new insights, new questions.

(2014) Biochem J 458

PubMed: 24576094 | PubMedCentral: PMC3940038 | DOI: 10.1042/BJ20140006

Figure 3 Catalogue of three-dimensional structures for RBR E3 ubiquitin ligases The upper panels show cartoon representations of multi-domain structures for ( A ) RING0–RBR from human parkin (... DB code 4I1F [ 35 ]; also PDB code 4K7D [ 34 ] and PDB code 4BM9 [ 36 ]), ( B ) human HHARI (PDB code 4KBL [ 42 ]) and ( C ) C-terminus of human HOIP (PDB code 4LJP [ 43 ]).

Publication Year: 2014


Structure of the human FANCL RING-Ube2T complex reveals determinants of cognate E3-E2 selection.

(2014) Structure 22

PubMed: 24389026 | PubMedCentral: PMC3979106 | DOI: 10.1016/j.str.2013.12.004

PDB ID codes used of RING and Ubox domains, as listed in the figure: 1FBV , 4F52 , 4AUQ , 3HCT , 2C2V , 3LIZ , 3RPG , 4AP4 , 4EPO , 2YHO , 2Y43 , 4KBL , and 4K7D .

Publication Year: 2014


Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin.

(2014) PLoS Comput Biol 10

PubMed: 25375667 | PubMedCentral: PMC4222639 | DOI: 10.1371/journal.pcbi.1003935

Our models were generated using the recently resolved X-ray structures of human N-terminal truncated Parkin (PDB IDs: 4BM9 [27] and 4I1H [24] ) and of its rat homolog (PDB IDs: 4K7D and 4K95 [26] ).

Our own findings (unpublished) and other recent studies [19] , [56] including the crystal structures (PDB IDs: 4K7D and 4K95) [26] support the dimerization/multimerization capability of Parkin.

RMSD comparison between human full-length pSer65 Parkin structural model and X-ray structures (4K7D, 4K95, 4BM9, 4I1H) for backbone residues 141–465, which measure to the initial conformation of pSer65 the following RMS values: 3.56 Å, 3.48 Å, 2.92 Å, and 1.72 Å, respectively.

Publication Year: 2014