2JSE

NMR reveals absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA.


Citations in PubMed

Primary Citation PubMed: 17929882 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 1

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

  • 3 per page
  • 5 per page
  • 10 per page
  • view all
  • Publication Year
  • Ascending
  • Descending

Structure determination of noncanonical RNA motifs guided by H NMR chemical shifts.

(2014) Nat Methods 11

PubMed: 24584194 | PubMedCentral: PMC3985481 | DOI: 10.1038/nmeth.2876

Motif name PDB a N nt b rmsd-top1 c , d (Å) rmsd-top5 c , e (Å) Known structures Single G:G mismatch 1F5G 6 0.71 0.71 UUCG tetraloop 2KOC 6 0.84 0.84 Tandem GA:AG mismatch 1MIS 8 1.10 ... .10 Tandem UG:UA mismatch 2JSE 8 3.02 2.52 16S rRNA UUAAGU loop 1FJG 8 0.52 0.52 HIV-1 TAR apical loop 1ANR 8 5.86 5.86 tRNA i Met ASL 1SZY 9 3.89 1.35 Conserved SRP internal loop 1LNT 12 0.81 0.81 R2 retrotransposon 4×4 loop 2L8F 12 1.17 1.17 Hepatitis C virus IRES IIa 2PN4 13 3.21 1.48 GAAA tetraloop-receptor 2R8S 15 0.68 0.68 Sc.ai5γ 3-way junction 2LU0 16 3.66 1.74 Blind targets UAAC tetraloop f 4A4R 6 0.94 0.94 UCAC tetraloop f 4A4S 6 1.00 1.00 UGAC tetraloop f 4A4U 6 3.60 1.67 UUAC tetraloop f 4A4T 6 1.72 1.72 Chimp HAR1 GAA loop 2LHP 7 2.88 2.88 Human HAR1 GAA loop 2LUB 7 2.26 2.03 GU:UAU internal loop – g 9 1.37 1.37 tRNA Gly ASL (cuUCCaa) h 2LBL 9 3.28 1.41 tRNA Gly ASL (cuUCCcg) h 2LBK 9 3.42 1.94 tRNA Gly ASL (uuGCCaa) h 2LBJ 9 3.08 2.93 5′-GAGU/3′-UGAG loop 2LX1 12 1.10 1.10 rmsd < 1.50 Å – – 11/23 14/23 rmsd < 2.00 Å – – 12/23 18/23 Additional information and full motif names provided in Supplementary Tables 1 and 3 .

Publication Year: 2014