Citations in PubMed

Primary Citation PubMed: 11780069 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 4

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Structural plasticity of eph receptor A4 facilitates cross-class ephrin signaling.

(2009) Structure 17

PubMed: 19836338 | PubMedCentral: PMC2832735 | DOI: 10.1016/j.str.2009.07.018

The structure of EphA4 was solved using EphB2 (PDB code 1NUK) as a molecular replacement model and the structures of EphA4 in complex with ephrinB2 and ephrinA2 were solved using the EphB2-ephrinB2 st... ucture (PDB code 1KGY).

EphrinB2 from EphA4-ephrinB2 is colored cyan, ephrinB2 from EphB2-ephrinB2 (PDB code 1KGY) is colored yellow, and ephrinB2 from EphB4-ephrinB2 (PDB code 2HLE) is colored gray.

These values are comparable to those observed in the EphA2-ephrinA1 (PDB code 3CZU), EphB2-ephrinB2 (PDB code 1KGY), and EphB4-ephrinB2 (PDB code 2HLE) structures (buried surface areas of 2260, 2380, and 2120 Å 2 , respectively), but are in contrast to EphB2-ephrinA5 (PDB code 1SHW; buried surface area of 1220 Å 2 ), the only other cross-class complex crystallized.

(B) Superposition of EphB2 (brown; PDB code 1KGY) and EphB4 (magenta; PDB code 2HLE) from their ephrinB2-bound states.

(C and D) EphA4 from its ephrinA2-bound state (C; yellow) and EphB2 from its ephrinB2-bound state (D; brown; PDB code 1KGY) with sequence conservation mapped onto the structure as blue (residues completely conserved between EphA sequences) and green (residues at least 80% conserved across Eph sequences) spheres.

Publication Year: 2009


Cells under siege: viral glycoprotein interactions at the cell surface.

(2011) J Struct Biol 175

PubMed: 21440638 | PubMedCentral: PMC3137789 | DOI: 10.1016/j.jsb.2011.03.016

(A) Crystal structure of EphB2 in complex with ephrinB2 (PDB ID 1KGY ).

Publication Year: 2011


Protein dynamics and conformational selection in bidirectional signal transduction.

(2012) BMC Biol 10

PubMed: 22277130 | PubMedCentral: PMC3266202 | DOI: 10.1186/1741-7007-10-2

The figure shows the dimeric and tetrameric complexes observed in the crystal structure (PDB: 1KGY).

Publication Year: 2012


Unique structure and dynamics of the EphA5 ligand binding domain mediate its binding specificity as revealed by X-ray crystallography, NMR and MD simulations.

(2013) PLoS One 8

PubMed: 24086308 | PubMedCentral: PMC3782497 | DOI: 10.1371/journal.pone.0074040

(b) Superimposition of the LBD structures of the unbound EphA5 (red), EphA2 in complex with ephrin-A2 (green, 3CZU), EphA4 with ephrin-A2 (cyan, 3WO3), EphA4 with ephrin-B2 (blue, 3GXU), EphB2 with ep... rin-B2 (pink, 1KGY) and EphB4 with ephrin-B2 (yellow, 2HLE).

Publication Year: 2013