Primary Citation PubMed: 11780069
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Structural plasticity of eph receptor A4 facilitates cross-class ephrin signaling.
(2009) Structure 17
PubMed: 19836338 | PubMedCentral: PMC2832735 | DOI: 10.1016/j.str.2009.07.018
The structure of EphA4 was solved using EphB2 (PDB code 1NUK) as a molecular replacement model and the structures of EphA4 in complex with ephrinB2 and ephrinA2 were solved using the EphB2-ephrinB2 st... ucture (PDB code 1KGY).
EphrinB2 from EphA4-ephrinB2 is colored cyan, ephrinB2 from EphB2-ephrinB2 (PDB code 1KGY) is colored yellow, and ephrinB2 from EphB4-ephrinB2 (PDB code 2HLE) is colored gray.
These values are comparable to those observed in the EphA2-ephrinA1 (PDB code 3CZU), EphB2-ephrinB2 (PDB code 1KGY), and EphB4-ephrinB2 (PDB code 2HLE) structures (buried surface areas of 2260, 2380, and 2120 Å 2 , respectively), but are in contrast to EphB2-ephrinA5 (PDB code 1SHW; buried surface area of 1220 Å 2 ), the only other cross-class complex crystallized.
(B) Superposition of EphB2 (brown; PDB code 1KGY) and EphB4 (magenta; PDB code 2HLE) from their ephrinB2-bound states.
(C and D) EphA4 from its ephrinA2-bound state (C; yellow) and EphB2 from its ephrinB2-bound state (D; brown; PDB code 1KGY) with sequence conservation mapped onto the structure as blue (residues completely conserved between EphA sequences) and green (residues at least 80% conserved across Eph sequences) spheres.
Publication Year: 2009
Cells under siege: viral glycoprotein interactions at the cell surface.
(2011) J Struct Biol 175
PubMed: 21440638 | PubMedCentral: PMC3137789 | DOI: 10.1016/j.jsb.2011.03.016
(A) Crystal structure of EphB2 in complex with ephrinB2 (PDB ID 1KGY ).
Publication Year: 2011
Protein dynamics and conformational selection in bidirectional signal transduction.
(2012) BMC Biol 10
PubMed: 22277130 | PubMedCentral: PMC3266202 | DOI: 10.1186/1741-7007-10-2
The figure shows the dimeric and tetrameric complexes observed in the crystal structure (PDB: 1KGY).
Publication Year: 2012
Unique structure and dynamics of the EphA5 ligand binding domain mediate its binding specificity as revealed by X-ray crystallography, NMR and MD simulations.
(2013) PLoS One 8
PubMed: 24086308 | PubMedCentral: PMC3782497 | DOI: 10.1371/journal.pone.0074040
(b) Superimposition of the LBD structures of the unbound EphA5 (red), EphA2 in complex with ephrin-A2 (green, 3CZU), EphA4 with ephrin-A2 (cyan, 3WO3), EphA4 with ephrin-B2 (blue, 3GXU), EphB2 with ep... rin-B2 (pink, 1KGY) and EphB4 with ephrin-B2 (yellow, 2HLE).
Publication Year: 2013
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