5LGO

Trypsin inhibitors for the treatment of pancreatitis - cpd 15


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.12 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 5LGO

Classification: HYDROLASE

Total Structure Weight: 23951.11

Macromolecule Entities
Molecule Chains Length Organism Details
Cationic trypsin A 223 Bos taurus EC#: 3.4.21.4 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamABCDE complex of the Bam β-barrel assembly machine


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6VZ
Query on 6VZ

A (2~{S},4~{S})-1-[4-(aminomethyl)-3-methoxy- phenyl]carbonyl-4-[4-(2-cyclopropylethoxy)- 6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidin- 7-yl]-~{N}-methyl-pyrrolidine-2-carboxamide
C27 H36 N6 O4
PZBPHXPZLFDRAP-REWPJTCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.12 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.175
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 55.23 α = 90.00
b = 55.23 β = 90.00
c = 106.98 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-07
  • Released Date: 2016-08-10
  • Deposition author(s): Schiering, N., D'Arcy, A.

Revision History

  • Version 1_0: 2016-08-10

    Type: Initial release

  • Version 1_1: 2016-08-24

    Type: Database references