4NM9

Crystal structure of the resting state of proline utilization A (PutA) from Geobacter sulfurreducens PCA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 4NM9

Classification: OXIDOREDUCTASE

Total Structure Weight: 227585.94

Macromolecule Entities
Molecule Chains Length Organism Details
Proline dehydrogenase and Delta-1-pyrroline-5-carboxylate dehydrogenase A, B 1005 Geobacter sulfurreducens EC#: 1.2.1.88 IUBMB 1.5.5.2 IUBMB
Gene Name(s): putA GSU3395
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Dehydrogenases

Protein Name: PutA proline utilization protein


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.163
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 95.25 α = 90.00
b = 151.21 β = 90.00
c = 175.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-14
  • Released Date: 2014-02-19
  • Deposition author(s): Singh, H., Tanner, J.J.

Revision History

  • Version 1_0: 2014-02-19

    Type: Initial release

  • Version 1_1: 2014-03-19

    Type: Database references