3VMA

Crystal Structure of the Full-Length Transglycosylase PBP1b from Escherichia coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 3VMA

Classification: TRANSFERASE HYDROLASE / ANTIBIOTIC

Total Structure Weight: 87163.48

Macromolecule Entities
Molecule Chains Length Organism Details
Penicillin-binding protein 1B A 768 Escherichia coli EC#: 2.4.1.129 IUBMB 3.4 IUBMB
Fragment: UNP residues 58-804
Gene Name(s): mrcB pbpF ponB b0149 JW0145
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Glycosyltransferases

Protein Name: Peptidoglycan Glycosyltransferase penicillin-binding protein 1b (PBP1b)


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
M0E
Query on M0E

A MOENOMYCIN
MOENOMYCIN (Synonym)
C69 H106 N5 O34 P
NXPRJQIAIORCGO-ZLPAOQQDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.212
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 62.90 α = 90.00
b = 289.53 β = 90.00
c = 62.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-09
  • Released Date: 2012-03-14
  • Deposition author(s): Huang, C.Y., Sung, M.T., Lai, Y.T., Chou, L.Y., Shih, H.W., Cheng, W.C., Wong, C.H., Ma, C.
  • This entry supercedes: 3FWM

Revision History

  • Version 1_0: 2012-03-14

    Type: Initial release