3Q5M

Crystal structure of Escherichia coli BamD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 3Q5M

Classification: PROTEIN BINDING

Total Structure Weight: 26528.95

Macromolecule Entities
Molecule Chains Length Organism Details
UPF0169 lipoprotein yfiO A 224 Escherichia coli Gene Name(s): bamD yfiO b2595 JW2577
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamCD complex of the Bam β-barrel assembly machine


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.216
  • Space Group: P 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 106.55 α = 90.00
b = 106.55 β = 90.00
c = 65.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-28
  • Released Date: 2011-12-28
  • Deposition author(s): Dong, C., Hou, H., Yang, X., Dong, Y., Shen, Y.

Revision History

  • Version 1_0: 2011-12-28

    Type: Initial release

  • Version 1_1: 2012-02-01

    Type: Database references

  • Version 1_2: 2012-05-02

    Type: Database references