3FID

LpxR from Salmonella typhimurium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 3FID

Classification: MEMBRANE PROTEIN

Total Structure Weight: 68825.38

Macromolecule Entities
Molecule Chains Length Organism Details
Putative outer membrane protein (LpxR) A, B 296 Salmonella enterica Fragment: mature domain, UNP residues 24-319
Gene Name(s): STM1328
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Monomeric/Dimeric

Protein Name: LpxR lipid A deacylase


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CXE
Query on CXE

A, B PENTAETHYLENE GLYCOL MONODECYL ETHER
C20 H42 O6
QAXPOSPGRHYIHE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.191
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 106.93 α = 90.00
b = 127.65 β = 90.00
c = 60.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-12-11
  • Released Date: 2009-02-10
  • Deposition author(s): Rutten, L., Gros, P.

Revision History

  • Version 1_0: 2009-02-10

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Derived calculations, Version format compliance

  • Version 1_2: 2017-11-01

    Type: Advisory, Refinement description