3EMN

The Crystal Structure of Mouse VDAC1 at 2.3 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 3EMN

Classification: MEMBRANE PROTEIN

Total Structure Weight: 32873.88

Macromolecule Entities
Molecule Chains Length Organism Details
Voltage-dependent anion-selective channel protein 1 X 295 Mus musculus Fragment: sequence database residues 14-296
Gene Name(s): Vdac1 Vdac5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Mitochondrial Outer Membrane

Protein Name: VDAC-1 voltage dependent anion channel


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MC3
Query on MC3

X 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
C36 H72 N O8 P
CITHEXJVPOWHKC-UUWRZZSWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.242
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 100.23 α = 90.00
b = 58.39 β = 99.25
c = 66.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-24
  • Released Date: 2008-12-16
  • Deposition author(s): Ujwal, R., Cascio, D., Colletier, J.-P., Faham, S., Zhang, J., Toro, L., Ping, P., Abramson, J.

Revision History

  • Version 1_0: 2008-12-16

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Derived calculations, Version format compliance