2YNK

Wzi, an Outer Membrane Protein Involved in Group 1 Capsule Assembly in Escherichia coli, is a Carbohydrate Binding Beta-Barrel


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 2YNK

Classification: MEMBRANE PROTEIN

Total Structure Weight: 53398.42

Macromolecule Entities
Molecule Chains Length Organism Details
WZI A 456 Escherichia coli Gene Name(s): RR31_11095
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Monomeric/Dimeric

Protein Name: Wzi outer-membrane lectin


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D12
Query on D12

A DODECANE
C12 H26
SNRUBQQJIBEYMU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OCT
Query on OCT

A N-OCTANE
C8 H18
TVMXDCGIABBOFY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEX
Query on HEX

A HEXANE
C6 H14
VLKZOEOYAKHREP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.245
  • Space Group: C 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 136.66 α = 90.00
b = 152.08 β = 90.00
c = 95.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-16
  • Released Date: 2013-05-15
  • Deposition author(s): Bushell, S.R., Mainprize, I.L., Wear, M.A., Lou, H., Kong, L., Davis, B., Bayley, H., Whitfield, C., Naismith, J.H.

Revision History

  • Version 1_0: 2013-05-15

    Type: Initial release

  • Version 1_1: 2013-05-29

    Type: Database references