6F1C
C1rC1s complex
- PDB DOI: https://doi.org/10.2210/pdb6F1C/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): No 
- Deposited: 2017-11-21 Released: 2018-01-17 
- Funding Organization(s): Medical Research Council (United Kingdom)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 4.20 Å
- R-Value Free: 0.305 
- R-Value Work: 0.247 
- R-Value Observed: 0.250 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Complement C1r subcomponent | A, B [auth C] | 291 | Homo sapiens | Mutation(s): 0  Gene Names: C1R EC: 3.4.21.41 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00736 (Homo sapiens) Explore P00736  Go to UniProtKB:  P00736 | |||||
PHAROS:  P00736 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00736 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Complement C1s subcomponent | C [auth D], D [auth B] | 277 | Homo sapiens | Mutation(s): 0  Gene Names: C1S EC: 3.4.21.42 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P09871 (Homo sapiens) Explore P09871  Go to UniProtKB:  P09871 | |||||
PHAROS:  P09871 GTEx:  ENSG00000182326  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09871 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-galactopyranose-(1-4)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G04562GJ GlyCosmos:  G04562GJ GlyGen:  G04562GJ |
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | F | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G22768VO GlyCosmos:  G22768VO GlyGen:  G22768VO |
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | M [auth A], R [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | AA [auth B] I [auth A] J [auth A] K [auth A] N [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
NA Query on NA | BA [auth B] L [auth A] Q [auth C] T [auth D] W [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 4.20 Å
- R-Value Free: 0.305 
- R-Value Work: 0.247 
- R-Value Observed: 0.250 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 96.779 | α = 90 |
b = 124.265 | β = 90 |
c = 195.499 | γ = 90 |
Software Name | Purpose |
---|---|
EDNA | data collection |
Aimless | data scaling |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
xia2 | data reduction |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-01-17  Deposition Author(s): Almitairi, J.O.M., Venkatraman Girija, U., Furze, C.M., Simpson-Gray, X., Badakshi, F., Marshall, J.E., Mitchell, D.A., Moody, P.C.E., Wallis, R.
Funding Organization | Location | Grant Number |
---|---|---|
Medical Research Council (United Kingdom) | United Kingdom | G1000191/1 |
Revision History (Full details and data files)
- Version 1.0: 2018-01-17
Type: Initial release - Version 1.1: 2018-01-31
Changes: Author supporting evidence, Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary