5W3J

Yeast microtubule stabilized with Taxol assembled from mutated tubulin


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.7 of the entry. See complete history


Literature

Structural differences between yeast and mammalian microtubules revealed by cryo-EM.

Howes, S.C.Geyer, E.A.LaFrance, B.Zhang, R.Kellogg, E.H.Westermann, S.Rice, L.M.Nogales, E.

(2017) J Cell Biol 216: 2669-2677

  • DOI: https://doi.org/10.1083/jcb.201612195
  • Primary Citation of Related Structures:  
    5W3F, 5W3H, 5W3J

  • PubMed Abstract: 

    Microtubules are polymers of αβ-tubulin heterodimers essential for all eukaryotes. Despite sequence conservation, there are significant structural differences between microtubules assembled in vitro from mammalian or budding yeast tubulin. Yeast MTs were not observed to undergo compaction at the interdimer interface as seen for mammalian microtubules upon GTP hydrolysis. Lack of compaction might reflect slower GTP hydrolysis or a different degree of allosteric coupling in the lattice. The microtubule plus end-tracking protein Bim1 binds yeast microtubules both between αβ-tubulin heterodimers, as seen for other organisms, and within tubulin dimers, but binds mammalian tubulin only at interdimer contacts. At the concentrations used in cryo-electron microscopy, Bim1 causes the compaction of yeast microtubules and induces their rapid disassembly. Our studies demonstrate structural differences between yeast and mammalian microtubules that likely underlie their differing polymerization dynamics. These differences may reflect adaptations to the demands of different cell size or range of physiological growth temperatures.


  • Organizational Affiliation

    Biophysics Graduate Group, University of California, Berkeley, Berkeley, CA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha-1 chain447Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for P09733 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P09733 
Go to UniProtKB:  P09733
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09733
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta chain457Saccharomyces cerevisiae S288CMutation(s): 5 
UniProt
Find proteins for P02557 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P02557 
Go to UniProtKB:  P02557
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02557
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONFREALIGN9.11

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States1106400
National Science Foundation (NSF, United States)United StatesMCB 1054947
National Science Foundation (NSF, United States)United States1615938
National Science Foundation (NSF, United States)United States2014177758
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01-GM098543
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32-GM008297
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP01-GM051487

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-19
    Type: Initial release
  • Version 1.1: 2017-09-20
    Changes: Author supporting evidence, Data collection, Database references
  • Version 1.2: 2017-11-08
    Changes: Derived calculations
  • Version 1.3: 2018-08-15
    Changes: Data collection, Other
  • Version 1.4: 2018-08-29
    Changes: Data collection, Source and taxonomy, Structure summary
  • Version 1.5: 2019-11-27
    Changes: Author supporting evidence
  • Version 1.6: 2019-12-18
    Changes: Other
  • Version 1.7: 2024-03-13
    Changes: Data collection, Database references