Macromolecules
Sequence Display for 5GTG

Classification: ISOMERASE

Total Structure Weight: 160278.67

Macromolecule Entities
Molecule Chains Length Organism Details
Lachrymatory-factor synthase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 175 Allium cepa EC#: 5.3 IUBMB
Gene Name(s): LFS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRE
Query on TRE

A TREHALOSE
ALPHA-D-GLUCOPYRANOSYL-ALPHA-D-GLUCOPYRANOSIDE (Synonym)
C12 H22 O11
HDTRYLNUVZCQOY-LIZSDCNHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGO
Query on PGO

A, B, D, G S-1,2-PROPANEDIOL
C3 H8 O2
DNIAPMSPPWPWGF-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.230
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 172.86 α = 90.00
b = 172.86 β = 90.00
c = 64.91 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-08-20
  • Released Date: 2017-08-23
  • Deposition author(s): Arakawa, T., Sato, Y., Takabe, J., Masamura, N., Tsuge, N., Imai, S., Fushinobu, S.

Revision History

  • Version 1_0: 2017-08-23

    Type: Initial release