5GTE

Crystal structure of onion lachrymatory factor synthase (LFS), solute-free form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 5GTE

Classification: ISOMERASE

Total Structure Weight: 80348.87

Macromolecule Entities
Molecule Chains Length Organism Details
Lachrymatory-factor synthase A, B, C, D 175 Allium cepa EC#: 5.3 IUBMB
Gene Name(s): LFS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRE
Query on TRE

A TREHALOSE
ALPHA-D-GLUCOPYRANOSYL-ALPHA-D-GLUCOPYRANOSIDE (Synonym)
C12 H22 O11
HDTRYLNUVZCQOY-LIZSDCNHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.12 α = 90.00
b = 118.66 β = 90.00
c = 124.50 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-08-20
  • Released Date: 2017-08-23
  • Deposition author(s): Takabe, J., Arakawa, T., Masamura, N., Tsuge, N., Imai, S., Fushinobu, S.

Revision History

  • Version 1_0: 2017-08-23

    Type: Initial release