5DIA

PIM1 in complex with Cpd36 ((1S,3S)-N1-(6-(5-(pyridin-3-yl)-1H-pyrazolo[3,4-c]pyridin-3-yl)pyridin-2-yl)cyclohexane-1,3-diamine)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 5DIA

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 34832.61

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 299 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: kinase domain (UNP residues 120-404)
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5E6
Query on 5E6

A (1S,3S)-N-{6-[5-(pyridin-3-yl)-1H-pyrazolo[3,4- c]pyridin-3-yl]pyridin-2-yl}cyclohexane-1,3- diamine
C22 H23 N7
FWMVELRLCYRLLJ-HOTGVXAUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.196
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.08 α = 90.00
b = 97.08 β = 90.00
c = 80.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-31
  • Released Date: 2015-10-28
  • Deposition author(s): Murray, J.M., Wallweber, H.

Revision History

  • Version 1_0: 2015-10-28

    Type: Initial release

  • Version 1_1: 2015-11-11

    Type: Database references