5BYI

Human carbonic anhydrase II with an azobenzene inhibitor (1d)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 5BYI

Classification: LYASE

Total Structure Weight: 30047.69

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A 260 Homo sapiens EC#: 4.2.1.1 IUBMB
Gene Name(s): CA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HGB
Query on HGB

A 4-(HYDROXYMERCURY)BENZOIC ACID
C7 H6 Hg O3
WMHRYLDWLOGHSG-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
4WA
Query on 4WA

A 4-[(E)-(4-aminophenyl)diazenyl]benzenesulfonamide
C12 H12 N4 O2 S
JSHXITVMUADQEA-FOCLMDBBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
4WA Ki: 106 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.171
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 42.05 α = 90.00
b = 41.22 β = 104.23
c = 71.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-10
  • Released Date: 2015-08-05
  • Deposition author(s): Groll, M., Broichhagen, J.

Revision History

No revisions since initial release