5XJT

Crystal Structure of the Gemin2-binding domain of SMN, Gemin2 in Complex with SmD1(1-82)/D2.R61A/F/E/G from Human

  • Classification: SPLICING
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2017-05-04 Released: 2018-07-04 
  • Deposition Author(s): Yi, H., Zhang, R.
  • Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structures of 7S mutant complexes

Yi, H., Zhang, R.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gem-associated protein 2A [auth 2]280Homo sapiensMutation(s): 0 
Gene Names: GEMIN2, SIP1
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PHAROS:  O14893
GTEx:  ENSG00000092208 
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UniProt GroupO14893
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein Sm D1B [auth A]82Homo sapiensMutation(s): 0 
Gene Names: SNRPD1
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PHAROS:  P62314
GTEx:  ENSG00000167088 
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UniProt GroupP62314
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein Sm D2C [auth B]118Homo sapiensMutation(s): 1 
Gene Names: SNRPD2, SNRPD1
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GTEx:  ENSG00000125743 
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UniProt GroupP62316
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein ED [auth E]92Homo sapiensMutation(s): 0 
Gene Names: SNRPE
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PHAROS:  P62304
GTEx:  ENSG00000182004 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein FE [auth F]86Homo sapiensMutation(s): 0 
Gene Names: SNRPF, PBSCF
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GTEx:  ENSG00000139343 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein GF [auth G]76Homo sapiensMutation(s): 0 
Gene Names: SNRPG, PBSCG
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GTEx:  ENSG00000143977 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Survival motor neuron proteinG [auth M]37Homo sapiensMutation(s): 0 
Gene Names: SMN1, SMN, SMNT, SMN2, SMNC
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Find proteins for Q16637 (Homo sapiens)
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PHAROS:  Q16637
GTEx:  ENSG00000172062 ENSG00000205571 
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.203 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.64α = 90
b = 84.76β = 90
c = 114.33γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata collection
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
DENZOdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31570720
National Natural Science Foundation of ChinaChina81441109

Revision History  (Full details and data files)

  • Version 1.0: 2018-07-04
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description