5UWN

Matrix metalloproteinase-13 complexed with selective inhibitor compound 10d


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 5UWN

Classification: hydrolase / hydrolase inhibitor

Total Structure Weight: 101515.55

Macromolecule Entities
Molecule Chains Length Organism Details
Collagenase 3 A, B, C, D, E 172 Homo sapiens EC#: 3.4.24 IUBMB
Details: CATALYTIC DOMAIN (UNP RESIDUES 104-274)
Gene Name(s): MMP13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8O7
Query on 8O7

A, B, C, D, E N-(2-aminoethyl)-4'-(((4-oxo-4,5,6,7-tetrahydro- 3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)- [1,1'-biphenyl]-4-sulfonamide
5, (Synonym)
C22 H24 N4 O3 S2
YDCCHZDGDMSTQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.195
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 131.73 α = 90.00
b = 131.73 β = 90.00
c = 418.72 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-02-21
  • Released Date: 2017-07-12
  • Deposition author(s): Taylor, A.B., Cao, X., Hart, P.J.

Revision History

  • 2017-07-26
    Type: Database references