5UWM

Matrix metalloproteinase-13 complexed with selective inhibitor compound (R)-17a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.129

Literature

Macromolecules
Sequence Display for 5UWM

Classification: hydrolase / hydrolase inhibitor

Total Structure Weight: 41281.67

Macromolecule Entities
Molecule Chains Length Organism Details
Collagenase 3 A, B 172 Homo sapiens EC#: 3.4.24 IUBMB
Details: CATALYTIC DOMAIN (UNP RESIDUES 104-274)
Gene Name(s): MMP13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Collagenase 3 C, D 5 Homo sapiens Details: Proteolytic fragment

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8OA
Query on 8OA

A, B (R)-N-(3-methyl-1-(methylamino)-1-oxobutan- 2-yl)-5-(4-(((4-oxo-4,5,6,7-tetrahydro-3H- cyclopenta[d]pyrimidin-2-yl)thio)methyl)phenyl)furan- 2-carboxamide
C25 H28 N4 O4 S
AHTVZGHNJWEFAC-OAQYLSRUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.129
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 140.07 α = 90.00
b = 140.07 β = 90.00
c = 46.86 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-02-21
  • Released Date: 2017-07-12
  • Deposition author(s): Taylor, A.B., Cao, X., Hart, P.J.

Revision History

  • 2017-07-26
    Type: Database references